Coddington, Jonathan
Former Lead: Global Genome Initiative, Senior Research Entomologist and Curator of Arachnida and Myriapoda
Systematics and behavior of spiders; species richness estimation; theory and design of biological inventories; global biodiversity genomics
Background And Education
Education And Training
- B.A., Yale University
- M.A., Harvard University
- Ph.D., Harvard University
Professional Biography
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I am currently the Director of the Global Genome Initiative and Senior Scientist in the Department of Entomology. The Global Genome Initiative (GGI) —organized by the Smithsonian Institution as part of its Institute for Biodiversity Genomics— seeks to “preserve and understand the genomic diversity of life.” With partners and collaborators, it aims to sample key branches of the Tree of Life phylogenetically and synoptically via a global network of biorepositories and research organizations. Specifics goals are to preserve sample of all families and 50% of described genera; to make these collections available for research, with appropriate access and benefit sharing (ABS); to increase computational support and technological capacity to sequence genomes; and to train the next generation of genomics researchers in biodiversity science.
From 2009 to 2014 I was the Associate Director for Science, NMNH. Responsibilities included overall leadership and administration of NMNH research and collections activities, including seven scientific departments comprising over 300 employees, a standing population of approximately 400 Ph.D.s, the Laboratory of Analytical Biology, the Collections Program (care, registration, digitization), Academic Services to interns, graduate students, fellows, research associates and collaborators, emeritus scientists, etc., high-level liaison and hosting of resident Federal Agencies (USDA, Commerce, Interior, Defense) and strategic initiatives (Encyclopedia of Life (EOL), Consortium for the Barcode of Life (CBOL), Integrated Taxonomic Information System (ITIS), and field stations (Smithsonian Marine Station at Fort Pierce and Carrie Bow Cay, Belize). Other areas of responsibility included support and curatorial partnerships with Exhibits, Education, and other outreach programs and the Office of Advancement, especially for NMNH strategic initiatives; and support and liaison for Operations and Informatics.
Awards And Honors
- Eugène Simon Award , conferred by International Society of Arachnology, 2019
- Top Ten New Species , 2009
- NMNH Peer Recognition Award, 2005
- Elected Fellow, 2003
- Honorary Research Fellow, conferred by Natural History Museum (London) , 2019 - 2022
- Board of Directors, conferred by International Barcode of Life, 2018 - 2021
- Chair, conferred by Subcommittee on Sample Collection and Processing, Earth BioGenome Project, 2019 - 2020
- Director and Past President, conferred by American Arachnological Society, 2013 - 2015
- President , conferred by American Arachnological Society, 2011 - 2013
- Vice President, conferred by International Society of Arachnology, 1989 - 1992
- Director, conferred by American Association for Zoological Nomenclature , 1990 - 1991
- Board of Directors, conferred by Organization for Tropical Studies, OTS, 1988 - 1991
- Board of Directors, conferred by American Arachnological Society, 1988 - 1990
- Director, conferred by Willi Hennig Society, 1985 - 1988
Research And Grants
Research Overview
- My research spans four broad topics: the systematics and evolution of spiders, especially orbweavers; issues in systematic theory and method; the theory and design of biological inventories; and, most recently, biodiversity genomics. Research on spider systematics has been directed at producing and synthesizing a first estimate of the higher phylogeny of spiders (e.g. "families"), especially orb-weaving spiders and their relatives. The resulting cladograms have been applied to empirical and theoretical studies of adaptation, behavior, evolution of web architecture, silk glands and spinneret spigot morphology, male genitalia, sexual size dimorphism, and patterns of species richness in spiders. I am interested in how adaptational hypotheses are developed and tested, as well as criteria for cladistic support. As a museum scientist, it also seems appropriate to focus on design and evaluation of rapid, efficient, quantitative sampling protocols to better understand the structure and distribution of biodiversity. Finally, the rapidly developing field of genomics will transform biodiversity science and, museum science, from the field to the laboratory.
Publications
Selected Publications
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Article
- Levesque-Beaudin, Valerie, Miller, Meredith, Dikow, Torsten, Miller, Scott E., Prosser, Sean, Zakharov, Evgeny, McKeown, Jaclyn, Sones, Jayme, Redmond, Niamh, Coddington, Jonathan, Santos, Bernardo, Bird, Jessica, and deWaard, Jeremy. 2023. "A workflow for expanding DNA barcode reference libraries through 'museum harvesting' of natural history collections." Biodiversity Data Journal, 11. https://doi.org/10.3897/BDJ.11.e100677. 2023
- Agnarsson, Ingi, Coddington, Jonathan A., Caicedo-Quiroga, Laura, May-Collado, Laura, and Pálsson, Snæbjörn. 2023. "Deep mtDNA Sequence Divergences and Possible Species Radiation of Whip Spiders (Arachnida, Amblypygi, Phrynidae, Phrynus/Paraphrynus) among Caribbean Oceanic and Cave Islands." Taxonomy, 3, (1) 133–147. https://doi.org/10.3390/taxonomy3010011. 2023
- Santos, Bernardo F., Miller, Meredith E., Miklasevskaja, Margarita, McKeown, Jaclyn T. A., Redmond, Niamh E., Coddington, Jonathan A., Bird, Jessica, Miller, Scott E., Smith, Ashton, Brady, Sean G., Buffington, Matthew L., Chamorro, M. Lourdes, Dikow, Torsten, Gates, Michael W., Goldstein, Paul, Konstantinov, Alexander, Kula, Robert, Silverson, Nicholas D., Solis, M. Alma, de Waard, Stephanie L., Naik, Suresh, Nikolova, Nadya, Pentinsaari, Mikko, Prosser, Sean W. J., Sones, Jayme E. et al. 2023. "Enhancing DNA barcode reference libraries by harvesting terrestrial arthropods at the Smithsonian's National Museum of Natural History." Biodiversity Data Journal, 11. https://doi.org/10.3897/BDJ.11.e100904. 2023
- Gostel, Morgan R., Carlsen, Mónica M., Devine, Amanda, Barker, Katharine B., Coddington, Jonathan A., and Steier, Julia. 2022. "Data Release: DNA Barcodes of Plant Species Collected for the Global Genome Initiative for Gardens (GGI-Gardens) II." Diversity, 14, (4). https://doi.org/10.3390/d14040234. 2022
- Scholz, Amber Hartman, Freitag, Jens, Lyal, Christopher H. C., Sara, Rodrigo, Lucia Cepeda, Martha, Cancio, Ibon, Sett, Scarlett, Hufton, Andrew Lee, Abebaw, Yemisrach, Bansal, Kailash, Benbouza, Halima, Boga, Hamadi Iddi, Brisse, Sylvain, Bruford, Michael W., Clissold, Hayley, Cochrane, Guy, Coddington, Jonathan A., Deletoille, Anne-Caroline, Garcia-Cardona, Felipe, Hamer, Michelle, Hurtado-Ortiz, Raquel, Miano, Douglas W., Nicholson, David, Oliveira, Guilherme, Ospina Bravo, Carlos et al. 2022. "Multilateral benefit-sharing from digital sequence information will support both science and biodiversity conservation." Nature Communications, 13, (1). https://doi.org/10.1038/s41467-022-28594-0. 2022
- Wolff, Jonas O., Wierucka, Kaja, Paterno, Gustavo B., Coddington, Jonathan A., Hormiga, Gustavo, Kelly, Michael B. J., Herberstein, Marie E., and Ramírez, Martín J. 2022. "Stabilized Morphological Evolution of Spiders Despite Mosaic Changes in Foraging Ecology." Systematic Biology, 71, (6) 1487–1503. https://doi.org/10.1093/sysbio/syac023. 2022
- Lawniczak, Mara K. N., Durbin, Richard, Flicek, Paul, Lindblad-Toh, Kerstin, Wei, Xiaofeng, Archibald, John M., Baker, William J., Belov, Katherine, Blaxter, Mark L., Bonet, Tomas Marques, Childers, Anna K., Coddington, Jonathan A., Crandall, Keith A., Crawford, Andrew J., Davey, Robert P., Di Palma, Federica, Fang, Qi, Haerty, Wilfried, Hall, Neil, Hoff, Katharina J., Howe, Kerstin, Jarvis, Erich D., Johnson, Warren E., Johnson, Rebecca N., Kersey, Paul J. et al. 2022. "Standards recommendations for the Earth BioGenome Project." Proceedings of the National Academy of Sciences of the United States of America, 119, (4). https://doi.org/10.1073/pnas.2115639118. 2022
- Lewin, Harris A., Richards, Stephen, Lieberman Aiden, Erez, Allende, Miguel L., Archibald, John M., Bálint, Miklós, Barker, Katharine B., Baumgartner, Bridget, Belov, Katherine, Bertorelle, Giorgio, Blaxter, Mark L., Cai, Jing, Caperello, Nicolette D., Carlson, Keith, Castilla-Rubio, Juan, Chaw, Shu-Miaw, Chen, Lei, Childers, Anna K., Coddington, Jonathan A., Conde, Dalia A., Corominas, Montserrat, Crandall, Keith A., Crawford, Andrew J., DiPalma, Federica, Durbin, Richard et al. 2022. "The Earth BioGenome Project 2020: Starting the clock." Proceedings of the National Academy of Sciences of the United States of America, 119, (4). https://doi.org/10.1073/pnas.2115635118. 2022
- Blaxter, Mark, Archibald, John M., Childers, Anna K., Coddington, Jonathan A., Crandall, Keith A., Di Palma, Federica, Durbin, Richard, Edwards, Scott V., Graves, Jennifer A. M., Hackett, Kevin J., Hall, Neil, Jarvis, Erich D., Johnson, Rebecca N., Karlsson, Elinor K., Kress, W. John, Kuraku, Shigehiro, Lawniczak, Mara K. N., Lindblad-Toh, Kerstin, Lopez, Jose V., Moran, Nancy A., Robinson, Gene E., Ryder, Oliver A., Shapiro, Beth, Soltis, Pamela S., Warnow, Tandy et al. 2022. "Why sequence all eukaryotes?" Proceedings of the National Academy of Sciences of the United States of America, 119, (4). https://doi.org/10.1073/pnas.2115636118. 2022
- Challita, Elio J., Alexander, Symone L. M., Han, Sarah I., Blackledge, Todd A., Coddington, Jonathan A., Jung, Sunghwan, and Bhamla, M. Saad. 2021. "Slingshot spiders build tensed, underdamped webs for ultrafast launches and speedy halts." Journal of Comparative Physiology A-Neuroethology Sensory Neural and Behavioral Physiology, https://doi.org/10.1007/s00359-021-01475-5. 2021
- de Santana, C. David, Parenti, Lynne R., Dillman, Casey B., Coddington, Jonathan A., Bastos, Douglas A., Baldwin, Carole C., Zuanon, Jansen, Torrente-Vilara, Gislene, Covain, Raphaël, Menezes, Naércio A., Datovo, Aléssio, Sado, T., and Miya, M. 2021. "The critical role of natural history museums in advancing eDNA for biodiversity studies: a case study with Amazonian fishes." Scientific Reports, 11, (1). https://doi.org/10.1038/s41598-021-97128-3. 2021
- Gainett, Guilherme, González, Vanessa L., Ballesteros, Jesus A., Setton, Emily V. W., Baker, Caitlin M., Barolo Gargiulo, Leonardo, Santibanez-Lopez, Carlos E., Coddington, Jonathan A., and Sharma, Prashant P. 2021. "The genome of a daddy-long-legs (Opiliones) illuminates the evolution of arachnid appendages." Proceedings of the Royal Society B: Biological Sciences, 288, (1956). https://doi.org/10.1098/rspb.2021.1168. 2021
- Scharff, Nikolaj, Coddington, Jonathan A., Blackledge, Todd A., Agnarsson, Ingi, Framenau, Volker W., Szűts, Tamás, Hayashi, Cheryl Y., and Dimitrov, Dimitar. 2020. "Phylogeny of the orb-weaving spider family Araneidae (Araneae: Araneoidea)." Cladistics, 36, (1) 1–21. https://doi.org/10.1111/cla.12382. 2020
- Kuntner, Matjaž, Hamilton, Chris A., Cheng, Ren-Chung, Gregoric, Matjaz, Lupse, Nik, Lokovsek, Tjasa, Lemmon, Emily Moriarty, Lemmon, Alan R., Agnarsson, Ingi, Coddington, Jonathan A., and Bond, Jason E. 2019. "Golden Orbweavers Ignore Biological Rules: Phylogenomic and Comparative Analyses Unravel a Complex Evolution of Sexual Size Dimorphism." Systematic Biology, 68, (4) 555–572. https://doi.org/10.1093/sysbio/syy082. 2019
- Kuntner, Matjaž and Coddington, Jonathan A. 2019. "Sexual Size Dimorphism: Evolution and Perils of Extreme Phenotypes in Spiders." Annual Review of Entomology, 65, (1). https://doi.org/10.1146/annurev-ento-011019-025032. 2019
- Coddington, Jonathan A., Agnarsson, Ingi, Hamilton, Chris A., and Bond, Jason E. 2019. "Spiders did not repeatedly gain, but repeatedly lost, foraging webs." Peerj, 7, (e6703). https://doi.org/10.7717/peerj.6703. 2019
- Lewin, Harris A., Robinson, Gene E., Kress, W. John, Baker, William J., Coddington, Jonathan, Crandall, Keith A., Durbin, Richard, Edwards, Scott V., Forest, Felix, Gilbert, M. Thomas P., Goldstein, Melissa M., Grigoriev, Igor V., Hackett, Kevin J., Haussler, David, Jarvis, Erich D., Johnson, Warren E., Patrinos, Aristides, Richards, Stephen, Castilla-Rubio, Juan Carlos, van Sluys, Marie-Anne, Soltis, Pamela S., Xu, Xun, Yang, Huanming, and Zhang, Guojie. 2018. "Earth BioGenome Project: Sequencing life for the future of life." Proceedings of the National Academy of Sciences of the United States of America, 115, (17) 4325–4333. https://doi.org/10.1073/pnas.1720115115. 2018
- Chamberland, Lisa, McHugh, Anne, Kechejian, Sarah, Binford, Greta J., Bond, Jason E., Coddington, Jonathan, Dolman, Gaynor, Hamilton, Chris A., Harvey, Mark S., Kuntner, Matjaž, and Agnarsson, Ingi. 2018. "From Gondwana to GAARlandia: Evolutionary history and biogeography of ogre-faced spiders (Deinopis)." Journal of Biogeography, 45, (11) 2442–2457. https://doi.org/10.1111/jbi.13431. 2018
- Wood, Hannah M., González, Vanessa L., Lloyd, Michael, Coddington, Jonathan, and Scharff, Nikolaj. 2018. "Next-Generation museum genomics: phylogenetic relationships among palpimanoid spiders using sequence capture techniques (Araneae: Palpimanoidea)." Molecular phylogenetics and evolution, 127 907–918. https://doi.org/10.1016/j.ympev.2018.06.038. 2018
- González, Vanessa L., Devine, Amanda M., Trizna, Mike, Mulcahy, Daniel G., Barker, Katherine, and Coddington, Jonathan A. 2018. "Open access genomic resources for terrestrial arthropods." Current Opinion in Insect Science, 25 91–98. https://doi.org/10.1016/j.cois.2017.12.003. 2018
- Voolstra, Christian R., GIGA Community, of Scientists, Wörheide, Gert, Lopez, Jose V., and Coddington, Jonathan A. 2017. "Advancing genomics through the Global Invertebrate Genomics Alliance (GIGA)." Invertebrate Systematics, 31, (1) 1–7. https://doi.org/10.1071/IS16059. 2017
- Zúñiga, Jose D., Gostel, Morgan R., Mulcahy, Daniel G., Barker, Katharine, Hill, Asia, Sedaghatpour, Maryam, Vo, Samantha Q., Funk, Vicki Ann, and Coddington, Jonathan A. 2017. "Data Release: DNA barcodes of plant species collected for the Global Genome Initiative for Gardens Program, National Museum of Natural History, Smithsonian Institution." PhytoKeys, 88 119–122. https://doi.org/10.3897/phytokeys.88.14607. 2017
- Malumbres-Olarte, Jagoba, Scharff, Nikolaj, Pape, Thomas, Coddington, Jonathan A., and Cardoso, Pedro. 2017. "Gauging megadiversity with optimized and standardized sampling protocols: A case for tropical forest spiders." Ecology and Evolution, 7, (2) 494–506. https://doi.org/10.1002/ece3.2626. 2017
- Neumann, D., Borisenko, A. V., Coddington, Jonathan A., Häuser, C. L., Butler, Carol R., Casino, A., Vogel, J. C., Haszprunar, G., and Giere, P. 2017. "Global biodiversity research tied up by juridical interpretations of access and benefit sharing." Organisms Diversity & Evolution, 1–12. https://doi.org/10.1007/s13127-017-0347-1. 2017
- Funk, Vicki Ann, Gostel, Morgan, Devine, Amanda, Kelloff, Carol L., Wurdack, Kenneth J., Tuccinardi, Chris, Radosavljevic, Aleks, Peters, Melinda, and Coddington, Jonathan. 2017. "Guidelines for collecting vouchers and tissues intended for genomic work (Smithsonian Institution): Botany Best Practices." Biodiversity Data Journal, (5) e11625. https://doi.org/10.3897/BDJ.5.e11625. 2017
- McCluskey, Kevin, Barker, Katharine B., Barton, Hazel A., Boundy-Mills, Kyria, Brown, Daniel R., Coddington, Jonathan A., Cook, Kevin, Desmeth, Philippe, Geiser, David, Glaeser, Jessie A., Greene, Stephanie, Kang, Seogchan, Lomas, Michael W., Melcher, Ulrich, Miller, Scott E., Nobles, David R., Owens, Kristina J., Reichman, Jerome H., da Silva, Manuela, Wertz, John, Whitworth, Cale, and Smith, David. 2017. "The U.S. Culture Collection Network Responding to the Requirements of the Nagoya Protocol on Access and Benefit Sharing." mBio, 8, (4). https://doi.org/10.1128/mBio.00982-17. 2017
- Schwager, Evelyn E., Sharma, Prashant P., Clarke, Thomas, Leite, Daniel J., Wierschin, Torsten, Pechmann, Matthias, Akiyama-Oda, Yasuko, Esposito, Lauren, Bechsgaard, Jesper, Bilde, Trine, Buffry, Alexandra D., Chao, Hsu, Dinh, Huyen, Doddapaneni, HarshaVardhan, Dugan, Shannon, Eibner, Cornelius, Extavour, Cassandra G., Funch, Peter, Garb, Jessica, Gonzalez, Luis B., González, Vanessa L., Griffiths-Jones, Sam, Han, Yi, Hayashi, Cheryl, Hilbrant, Maarten et al. 2017. "The house spider genome reveals an ancient whole-genome duplication during arachnid evolution." BMC biology, 15, (1) 62. https://doi.org/10.1186/s12915-017-0399-x. 2017
- Wheeler, Ward C., Coddington, Jonathan A., Crowley, Louise M., Dimitrov, Dimitar, Goloboff, Pablo A., Griswold, Charles E., Hormiga, Gustavo, Prendini, Lorenzo, Ramírez, Martín J., Sierwald, Petra, Almeida-Silva, Lina, Alvarez-Padilla, Fernando, Arnedo, Miquel A., Benavides Silva, Ligia R., Benjamin, Suresh P., Bond, Jason E., Grismado, Cristian J., Hasan, Emile, Hedin, Marshal, Izquierdo, Matías A., Labarque, Facundo M., Ledford, Joel, Lopardo, Lara, Maddison, Wayne P., Miller, Jeremy A. et al. 2017. "The spider tree of life: phylogeny of Araneae based on target-gene analyses from an extensive taxon sampling." Cladistics, 33, (6) 574–616. https://doi.org/10.1111/cla.12182. 2017
- Coddington, Jonathan A., Agnarsson, Ingi, Cheng, Ren-Chung, Čandek, Klemen, Driskell, Amy, Frick, Holger, Gregorič, Matjaž, Kostanjšek, Rok, Kropf, Christian, Kweskin, Matthew, Lokovšek, Tjaša, Pipan, Miha, Vidergar, Nina, and Kuntner, Matjaž. 2016. "DNA barcode data accurately assign higher spider taxa." PeerJ, 4 e2201. https://doi.org/10.7717/peerj.2201. 2016
- Seberg, O., Droege, G., Barker, K., Coddington, Jonathan A., Funk, Vicki Ann, Gostel, Morgan, Petersen, G., and Smith, P. P. 2016. "Global Genome Biodiversity Network: saving a blueprint of the Tree of Life - a botanical perspective." Annals of Botany, 118, (3) 393–399. https://doi.org/10.1093/aob/mcw121. 2016
- Mulcahy, Daniel G., Macdonald, Kenneth S., Brady, Seán G., Meyer, Christopher, Barker, Katharine B., and Coddington, Jonathan. 2016. "Greater than X kb: a quantitative assessment of preservation conditions on genomic DNA quality, and a proposed standard for genome-quality DNA." PeerJ, 4 e2528. https://doi.org/10.7717/peerj.2528. 2016
- Agnarsson, Ingi, LeQuier, Stephanie M., Kuntner, Matjaž, Cheng, Ren-Chung, Coddington, Jonathan A., and Binford, Greta. 2016. "Phylogeography of a good Caribbean disperser: Argiope argentata (Araneae, Araneidae) and a new 'cryptic' species from Cuba." ZooKeys, (625) 25–44. https://doi.org/10.3897/zookeys.625.8729. 2016
- Garrison, Nicole L., Rodriguez, Juanita, Agnarsson, Ingi, Coddington, Jonathan A., Griswold, Charles E., Hamilton, Christopher A., Hedin, Marshal, Kocot, Kevin M., Ledford, Joel M., and Bond, Jason E. 2016. "Spider phylogenomics: untangling the Spider Tree of Life." PeerJ, 4 e1719. https://doi.org/10.7717/peerj.1719. 2016
- Droege, G., Barker, K., Seberg, O., Coddington, Jonathan A., Benson, E., Berendsohn, W. G., Bunk, B., Butler, C., Cawsey, E. M., Deck, J., Döring, M., Flemons, P., Gemeinholzer, B., Güntsch, A., Hollowell, Thomas H., Kelbert, P., Kostadinov, I., Kottmann, R., Lawlor, R. T., Lyal, Christopher H. C., Mackenzie-Dodds, J., Meyer, C., Mulcahy, D., Nussbeck, S. Y., O'Tuama, é. et al. 2016. "The Global Genome Biodiversity Network (GGBN) Data Standard specification." Database, 2016 1–11. https://doi.org/10.1093/database/baw125. 2016
- Dziki, Austin, Binford, Greta J., Coddington, Jonathan A., and Agnarsson, Ingi. 2015. "Spintharus flavidus in the Caribbean-a 30 million year biogeographical history and radiation of a 'widespread species'." PeerJ, 3. https://doi.org/10.7717/peerj.1422. 2015
- Kuntner, Matjaž, Năpăruş, Magdalena, Li, Daiqin, and Coddington, Jonathan A. 2014. "Phylogeny Predicts Future Habitat Shifts Due to Climate Change." PLoS ONE, 9, (6). https://doi.org/10.1371/journal.pone.0098907. 2014
- Davies, Neil, Field, Dawn, Amaral-Zettler, Linda, Bicak, Mesude, Bourlat, Sarah, Coddington, Jonathan A., Deck, John, Drummond, Alexei, Gilbert, Jack A., Glöckner, Frank Oliver, Kottmann, Renzo, Meyer, Christopher P., Morrison, Norman, Obst, Matthias, Robbins, Robert, Schriml, Lynn, Sterk, Peter, and Stones-Havas, Steven. 2014. "Report of the 14th Genomic Standards Consortium Meeting, Oxford, UK, September 17-21, 2012." Standards in Genomic Sciences, 9, (3) 1236–1250. https://doi.org/10.4056/sigs.4319681. 2014
- Droege, Gabriele, Barker, Katharine, Astrin, Jonas J., Bartels, Paul, Butler, Carol R., Cantrill, David, Coddington, Jonathan A., Forest, Fé, Gemeinholzer, Birgit, Hobern, Donald, Mackenzie-Dodds, Jacqueline, Tuama, Éamonn Ó., Petersen, Gitte, Sanjur, Oris I., Schindel, David, and Seberg, Ole. 2014. "The Global Genome Biodiversity Network (GGBN) Data Portal." Nucleic acids research, 42, (D1) D607–D612. https://doi.org/10.1093/nar/gkt928. 2014
- Davies, Neil, Field, Dawn, Amaral-Zettler, Linda, Clark, Melody S., Deck, John, Drummond, Alexei, Faith, Daniel P., Geller, Jonathan, Gilbert, Jack, Glöckner, Frank Oliver, Hirsch, Penny, Leong, Jo-Ann, Meyer, Christopher P., Obst, Matthias, Planes, Serge, Scholin, Chris, Vogler, Alfried P., Gates, Ruth D., Toonen, Robert J., Berteaux-Lecellier, V., Barbier, Michèle, Barker, Katherine, Bertilsson, Stefan, Bicak, Mesude, Bietz, Matthew J. et al. 2014. "The founding charter of the Genomic Observatories Network." GigaScience, 3, (1). https://doi.org/10.1186/2047-217X-3-2. 2014
- Evans, Jay D., Brown, Susan, Hackett, Kevin J., Robinson, Gene, Richards, Stephen, Lawson, Daniel, Elsik, Christine, Coddington, Jonathan A., Edwards, Owain, Emrich, Scott, Gabaldon, Toni, Goldsmith, Marian, Hanes, Glenn, Misof, Bernard, Muñoz-Torres, Monica, Niehuis, Oliver, Papanicolaou, Alexie, Pfrender, Michael, Poelchau, Monica, Purcell-Miramontes, Mary, Robertson, Hugh M., Ryder, Oliver, Tagu, Denis, Torres, Tatiana, Zdobnov, Evgeny et al. 2013. "The i5K Initiative: advancing arthropod genomics for knowledge, human health, agriculture, and the environment." The Journal of heredity, 104, (5) 595–600. https://doi.org/10.1093/jhered/est050. 2013
- Pekár, Stano, Coddington, Jonathan A., and Blackledge, Todd A. 2012. "Evolution of Stenophagy in Spiders (araneae): Evidence Based on the Comparative Analysis of Spider Diets." Evolution, 66, (3) 776–806. https://doi.org/10.1111/j.1558-5646.2011.01471.x. 2012
- Wheeler, Quentin, Bourgoin, Thierry, Coddington, Jonathan A., Gostony, Timothy, Hamilton, Andrew, Larimer, Roy, Polaszek, Andrew, Schauff, Michael, and Solis, M. Alma. 2012. "Nomenclatural benchmarking: the roles of digital typification and telemicroscopy." Zookeys, (209) 193–202. https://doi.org/10.3897/zookeys.209.3486. 2012
- Cardoso, Pedro, Pekár, Stano, Jocqué, Rudy, and Coddington, Jonathan A. 2011. "Global Patterns of Guild Composition and Functional Diversity of Spiders." PLoS ONE, 6, (6) 1–10. https://doi.org/10.1371/journal.pone.0021710. 2011
- Higgins, Linden, Coddington, Jonathan A., Goodnight, Charles, and Kuntner, Matjaž. 2011. "Testing ecological and developmental hypotheses of mean and variation in adult size in nephilid orb-weaving spiders." Evolutionary Ecology, 25, (6) 1289–1306. https://doi.org/10.1007/s10682-011-9475-9. 2011
- Agnarsson, Ingi, Kuntner, Matjaž, Coddington, Jonathan A., and Blackledge, Todd A. 2010. "Shifting continents, not behaviours: independent colonization of solitary and subsocial Anelosimus spider lineages on Madagascar (Araneae, Theridiidae)." Zoologica Scripta, 39, (1) 75–87. https://doi.org/10.1111/j.1463-6409.2009.00406.x. 2010
- Ramirez, Martin J., Maddison, Wayne, and Coddington, Jonathan A. 2010. "Use of ontologies to document characters." Cladistics, 26, (2) 223–223. 2010
- Kuntner, Matjaž and Coddington, Jonathan A. 2009. "Discovery of the Largest Orbweaving Spider Species: The Evolution of Gigantism in Nephila." PLoS ONE, 4, (10) e7516. 2009
- Coscaron, M. C., Melo, M. C., Coddington, Jonathan A., and Corronca, J. 2009. "Estimating biodiversity: a case study on true bugs in argentinian wetlands." Biodiversity and Conservation, 18, (6) 1491–1507. https://doi.org/10.1007/s10531-008-9515-0. 2009
- Blackledge, Todd A., Coddington, Jonathan A., and Agnarsson, Ingi. 2009. "Fecundity increase supports adaptive radiation hypothesis in spider web evolution." Communicative & Integrative Biology, 2, (6) 1–5. https://doi.org/10.4161/cib.2.6.8855. 2009
- Kuntner, Matjaž, Coddington, Jonathan A., and Schneider, Jutta M. 2009. "Intersexual Arms Race? Genital Coevolution in Nephilid Spiders (Araneae, Nephilidae)." Evolution, 63, (6) 1451–1463. https://doi.org/10.1111/j.1558-5646.2009.00634.x. 2009
- Blackledge, Todd A., Scharff, Nikolaj, Coddington, Jonathan A., Szüts, Tamas, Wenzel, John,W., Hayashi, Cheryl,Y., and Agnarsson, Ingi. 2009. "Reconstructing web evolution and spider diversification in the molecular era." Proceedings of the National Academy of Sciences of the United States of America, 106, (13) 5229–5234. https://doi.org/10.1073/pnas.0901377106. 2009
- Coddington, Jonathan A., Agnarsson, Ingi, Miller, Jeremy A., Kuntner, Matjaž, and Hormiga, Gustavo. 2009. "Undersampling bias: the null hypothesis for singleton species in tropical arthropod surveys." Journal of Animal Ecology, 78, (3) 573–584. https://doi.org/10.1111/j.1365-2656.2009.01525.x. 2009
- Stork, Nigel E., Coddington, Jonathan A., Colwell, Robert K., Chazdon, Robin L., Dick, Christopher W., Peres, Carlos A., Sloan, Sean, and Willis, Kathy. 2009. "Vulnerability and Resilience of Tropical Forest Species to Land-Use Change." Conservation Biology, 23, (6) 1438–1447. https://doi.org/10.1111/j.1523-1739.2009.01335.x. 2009
- Kuntner, Matjaž, Coddington, Jonathan A., and Hormiga, G. 2008. "Phylogeny of extant nephilid orb-weaving spiders (Araneae, Nephilidae): testing morphological and ethological homologies." Cladistics, 24, (2) 147–217. https://doi.org/10.1111/j.1096-0031.2007.00176.x. 2008
- Agnarsson, Ingi and Coddington, Jonathan A. 2008. "Quantitative tests of primary homology." Cladistics, 24, (1) 51–61. https://doi.org/10.1111/j.1096-0031.2007.00168.x. 2008
- Agnarsson, Ingi, Coddington, Jonathan A., and May-Collado, L. J. 2007. "Elongated pedicillate setae: A putative sensory system and synapomorphy of spiders." Journal of Arachnology, 35, (3) 411–426. https://doi.org/10.1636/SH07-01.1. 2007
- Ramirez, Martin J., Coddington, Jonathan A., Maddison, Wayne P., Midford, Peter E., Prendini, Lorenzo, Miller, Jeremy, Griswold, Charles E., Hormiga, Gustavo, Sierwald, Petra, and Scharff, Nikolaj. 2007. "Linking of Digital Images to Phylogenetic Data Matrices Using a Morphological Ontology." Systematic Biology, 56, (2) 283–294. https://doi.org/10.1080/10635150701313848. 2007
- Agnarsson, Ingi, Coddington, Jonathan A., and Knoflach, Barbara. 2007. "Morphology and evolution of cobweb spider male genitalia (Araneae: Theridiidae)." Journal of Arachnology, 35 334–395. 2007
- Coddington, Jonathan A. 2007. "Subsociality in Helvibis thorelli Keyserling, 1884 (Theridiinae, Theridiidae, Araneae) from French Guiana." Journal of Arachnology, 34, (3) 642–645. https://doi.org/10.1636/05-84.1. 2007
- Rowley, D. L., Coddington, Jonathan A., Gates, Michael W., Norrbom, Allen L., Ochoa, Ronald, Vandenberg, Natalia J., and Greenstone, M. H. 2007. "Vouchering DNA-barcoded specimens: test of a nondestructive extraction protocol for terrestrial arthropods." Molecular Ecology Notes, 7 915–924. 2007
- The Genera of the Spider Family Theridiosomatidae. Smithsonian Contributions to Zoology. 1-96.
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Book
- Coddington, Jonathan A., Kuntner, Matjaž, and Opell, Brent D. 2012. Systematics of the Spider Family Deinopidae with a Revision of the Genus Menneus. Smithsonian Institution Scholarly Press. In Smithsonian Contributions to Zoology, 636. https://doi.org/10.5479/si.00810282.636.1. 2012
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Chapter
- Lopardo, Lara and Coddington, Jonathan A. 2017. "Anapidae." In Spiders of North America: an identification manual. Ubick, D., Paquin, P., Cushing, P. E., and Roth, V., editors. 73–74. Denver: American Arachnological Society. 2017
- Coddington, Jonathan A. 2017. "Deinopidae." In Spiders of North America: an identification manual. Ubick, D., Paquin, P., Cushing, P. E., and Roth, V., editors. 102–103. Denver: American Arachnological Society. 2017
- Lopardo, Lara and Coddington, Jonathan A. 2017. "Mysmenidae." In Spiders of North America: an identification manual. Ubick, D., Paquin, P., Cushing, P. E., and Roth, V., editors. 187–188. Denver: American Arachnological Society. 2017
- Lopardo, Lara, Coddington, Jonathan A., and Paquin, P. 2017. "Symphytognathidae." In Spiders of North America: an identification manual. Ubick, D., Paquin, P., Cushing, P. E., and Roth, V., editors. 248–249. Denver: American Arachnological Society. 2017
- Coddington, Jonathan A. 2017. "Theridiosomatidae." In Spiders of North America: an identification manual. Ubick, D., Paquin, P., Cushing, P. E., and Roth, V., editors. 270–271. Denver: American Arachnological Society. 2017
- Coddington, Jonathan A., Barker, Katharine, Droege, Gabriele, Astrin, Jonas J., Bartels, Paul, Butler, Carol R., Cantrill, David, Forest, Felix, Gemeinholzer, Birgit, Hobern, Donald, Mackenzie-Dodds, Jackie, Tuama, Éamonn Ó., Petersen, Gitte, Sanjur, Oris I., Schindel, David E., and Seberg, Ole. 2014. "GGBN: Making Genomic Collections Discoverable for Research through a Networked Community of Biodiversity Repositories." In DNA Banking for the 21st Century. Applequist, W. A. and Campbell, L. M., editors. 165–168. 2014
- Agnarsson, Ingi, Coddington, Jonathan A., and Kuntner, Matjaž. 2013. "Systematics: progress in the study of spider diversity and evolution." In Spider Research in the 21st Century: Trends and Perspectives. Penney, David, editor. 58–111. Siri Scientific Press. 2013
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Dataset
- Wolff, Jonas O., Wierucka, Kaja, Coddington, Jonathan A., Hormiga, Gustavo, Kelly, Michael B. J., Herberstein, Marie E., Ramírez, Martín J., and Paterno, Gustavo B. 2021. [Dataset] Stabilized morphological evolution of spiders despite mosaic changes in foraging ecology. Distributed by Dryad. https://doi.org/10.5061/DRYAD.2280GB5RZ. 2021
Affiliation
Head Of
- Global Genome Initiative Director 2014 - 2022