Borowiec, Marek L., Dikow, Rebecca B., Frandsen, Paul B., McKeeken, Alexander, Valentini, Gabriele, and White, Alexander E. 2022. "Deep learning as a tool for ecology and evolution." Methods in Ecology and Evolution, https://doi.org/10.1111/2041-210X.13901.
2022
Kawahara, Akito Y., Storer, Caroline G., Markee, Amanda, Heckenhauer, Jacqueline, Powell, Ashlyn, Plotkin, David, Hotaling, Scott, Cleland, Timothy P., Dikow, Rebecca B., Dikow, Torsten, Kuranishi, Ryoichi B., Messcher, Rebeccah, Pauls, Steffen U., Stewart, Russell J., Tojo, Koji, and Frandsen, Paul B. 2022. "Long-read HiFi sequencing correctly assembles repetitive heavy fibroin silk genes in new moth and caddisfly genomes." Gigabyte, 2022 1–14. https://doi.org/10.46471/gigabyte.64.
2022
Arias, Carlos F., Dikow, Rebecca B., McMillan, W. Owen, and De Leon, Luis F. 2021. "De Novo Genome Assembly of the Electric Fish Brachyhypopomus occidentalis (Hypopomidae, Gymnotiformes)." Genome Biology and Evolution, 13, (10). Oxford; England: Oxford University Press, https://doi.org/10.1093/gbe/evab223.
2021
Olsen, Lindsey K., Heckenhauer, Jacqueline, Sproul, John S., Dikow, Rebecca B., González, Vanessa L., Kweskin, Matthew P., Taylor, Adam M., Wilson, Seth B., Stewart, Russell J., Zhou, Xin, Holzenthal, Ralph, Pauls, Steffen U., and Frandsen, Paul B. 2021. "Draft Genome Assemblies and Annotations of Agrypnia vestita Walker, and Hesperophylax magnus Banks Reveal Substantial Repetitive Element Expansion in Tube Case-Making Caddisflies (Insecta: Trichoptera)." Genome Biology and Evolution, 13, (3), Oxford; England: Oxford University Press. https://doi.org/10.1093/gbe/evab013.
2021
Li, Xuankun, Ellis, Emily, Plotkin, David, Imada, Yume, Yago, Masaya, Heckenhauer, Jacqueline, Cleland, Timothy P., Dikow, Rebecca B., Dikow, Torsten, Storer, Caroline G., Kawahara, Akito Y., and Frandsen, Paul B. 2021. "First annotated genome of a mandibulate moth, Neomicropteryx cornuta , generated using PacBio HiFi sequencing." Genome Biology and Evolution, 13, (10). https://doi.org/10.1093/gbe/evab229.
2021
Edelman, Nathaniel B., Frandsen, Paul B., Miyagi, Michael, Clavijo, Bernardo, Davey, John, Dikow, Rebecca B., Garcia-Accinelli, Gonzalo, Van Belleghem, Steven M., Patterson, Nick, Neafsey, Daniel E., Challis, Richard, Kumar, Sujai, Moreira, Gilson R. P., Salazar, Camilo, Chouteau, Mathieu, Counterman, Brian A., Papa, Riccardo, Blaxter, Mark, Reed, Robert D., Dasmahapatra, Kanchon K., Kronforst, Marcus, Joron, Mathieu, Jiggins, Chris D., McMillan, W. Owen, Di Palma, Federica et al. 2019. "Genomic architecture and introgression shape a butterfly radiation." Science 366 (6465):594- . https://doi.org/10.1126/science.aaw20902019
Hawkins, Melissa T. R., Culligan, Ryan R., Frasier, Cynthia L., Dikow, Rebecca B., Hagenson, Ryan, Lei, Runhua, and Louis, Edward E., Jr. 2018. "Genome sequence and population declines in the critically endangered greater bamboo lemur (Prolemur simus) and implications for conservation." Bmc Genomics 19:445-445. https://doi.org/10.1186/s12864-018-4841-42018
Ren, Zhu-Mei, Harris, Aj, Dikow, Rebecca B., Ma, Enbo, Zhong, Yang, and Wen, Jun. 2017. "Another look at the phylogenetic relationships and intercontinental biogeography of eastern Asian – North American Rhus gall aphids (Hemiptera: Aphididae: Eriosomatinae): Evidence from mitogenome sequences via genome skimming." Molecular phylogenetics and evolution 117:102-110. https://doi.org/10.1016/j.ympev.2017.05.0172017
Schuettpelz, Eric, Frandsen, Paul, Dikow, Rebecca B., Brown, Abel, Orli, Sylvia S., Peters, Melinda, Metallo, Adam, Funk, Vicki, and Dorr, Laurence J. 2017. "Applications of deep convolutional neural networks to digitized natural history collections." Biodiversity Data Journal 5:e21139. https://doi.org/10.3897/BDJ.5.e211392017
Wen, Jun, Harris, Aj, Ickert-Bond, Stefanie, Dikow, Rebecca B., Wurdack, Kenneth J., and Zimmer, Elizabeth Anne. 2017. "Developing integrative systematics in the informatics and genomic era, and calling for a global Biodiversity Cyberbank." Journal of Systematics and Evolution 55 (4):308-321. https://doi.org/10.1111/jse.122702017
Mandel, Jennifer R., Barker, Michael S., Bayer, Randall J., Dikow, Rebecca B., Gao, Tian-Gang, Jones, Katy E., Keeley, Sterling, Kilian, Norbert, Ma, Hong, Siniscalchi, Carolina M., Susanna, Alfonso, Thapa, Ramhari, Watson, Linda, and Funk, Vicki Ann. 2017. "The Compositae Tree of Life in the age of phylogenomics." Journal of Systematics and Evolution 55 (4):405-410. https://doi.org/10.1111/jse.122652017
Nygaard, Sanne, Hu, Haofu, Li, Cai, Schiott, Morten, Chen, Zhensheng, Yang, Zhikai, Xie, Qiaolin, Ma, Chunyu, Deng, Yuan, Dikow, Rebecca B., Rabeling, Christian, Nash, David R., Wcislo, William T., Brady, Seán Gary, Schultz, Ted R., Zhang, Guojie, and Boomsma, Jacobus J. 2016. "Reciprocal genomic evolution in the ant-fungus agricultural symbiosis." Nature Communications 7:e12233. https://doi.org/10.1038/ncomms122332016
Mandel, Jennifer R., Dikow, Rebecca B., Funk, Vicki Ann, Masalia, Rishi R., Staton, S. Evan, Kozik, Alex, Michelmore, Richard W., Rieseberg, Loren H., and Burke, John M. 2014. "A Target Enrichment Method for Gathering Phylogenetic Information from Hundreds of Loci: An Example from the Compositae." Applications in Plant Sciences 2 (2):https://doi.org/10.3732/apps.13000852014
Callicrate, Taylor, Dikow, Rebecca B., Thomas, James W., Mullikin, James C., Jarvis, Erich D., and Fleischer, Robert C. 2014. "Genomic resources for the endangered Hawaiian honeycreepers." BMC Genomics 15 (1):https://doi.org/10.1186/1471-2164-15-10982014
