Johnson, Gabriel
National Museum of Natural History staff
Selected Publications
Article
Lan, Zhi-Qiong, Zheng, Wen, Talavera, Alicia, Nie, Ze-Long, Liu, Jing, Johnson, Gabriel, Yin, Xian-Mei, Zhao, Wen-Qi, Zhao, Zong-Yi, Handy, Sara M., and Wen, Jun. 2024. "Comparative and phylogenetic analyses of plastid genomes of the medicinally important genus Alisma (Alismataceae) ." Frontiers in Plant Science , 15. https://doi.org/10.3389/fpls.2024.1415253 .
2024
Ren, Chen, Wang, Long, Nie, Ze-Long, Tang, Ming, Johnson, Gabriel, Tan, Hui-Tong, Xia, Nian-He, Wen, Jun, and Yang, Qin-Er. 2024. "Complex but Clear Allopolyploid Pattern of Subtribe Tussilagininae (Asteraceae: Senecioneae) Revealed by Robust Phylogenomic Evidence, with Development of a Novel Homeolog-Sorting Pipeline ." Systematic Biology , https://doi.org/10.1093/sysbio/syae046 .
2024
Zhang, Meng‐Hua, Nie, Ze‐Long, Fairbanks, Regina A., Liu, Jing, Literman, Robert, Johnson, Gabriel, Handy, Sara, and Wen, Jun. 2024. "Phylogenomic insights into species relationships, reticulate evolution, and biogeographic diversification of the ginseng genus Panax (Araliaceae), with an emphasis on the diversification in the Himalayan‐Hengduan Mountains ." Journal of Systematics and Evolution , https://doi.org/10.1111/jse.13138 .
2024
De Silva, Shashini, Cagliero, Cecilia, Gostel, Morgan R., Johnson, Gabriel, and Anderson, Jared L. 2024. "Versatile DNA extraction from diverse plant taxa using ionic liquids and magnetic ionic liquids: a methodological breakthrough for enhanced sample utility ." Plant Methods , 20, (1). https://doi.org/10.1186/s13007-024-01217-z .
2024
Ballantine, David L., Norris, James N., Johnson, Gabe P., and Ruiz, Hector J. 2023. "Dasya hispida sp. nov. (Delesseriaceae, Rhodophyta) from Puerto Rico and Grenada, Caribbean seaBotanica Marina , https://doi.org/10.1515/bot-2022-0065 .
2023
Nie, Ze‐Long, Hodel, Richard, Ma, Zhi‐Yao, Johnson, Gabriel, Ren, Chen, Meng, Ying, Ickert‐Bond, Stefanie M., Liu, Xiu‐Qun, Zimmer, Elizabeth, and Wen, Jun. 2023. "Climate‐influenced boreotropical survival and rampant introgressions explain the thriving of New World grapes in the north temperate zone ." Journal of Integrative Plant Biology , 65, (5) 1183–1203. https://doi.org/10.1111/jipb.13466 .
2023
Johnson, Gabriel, Canty, Steven W. J., Lichter‐Marck, Isaac H., Wagner, Warren, and Wen, Jun. 2023. "Ethanol preservation and pretreatments facilitate quality DNA extractions in recalcitrant plant species." Applications in Plant Sciences , https://doi.org/10.1002/aps3.11519 .
2023
De Silva, Shashini, Ocaña-Rios, Iran, Cagliero, Cecilia, Gostel, Morgan R., Johnson, Gabriel P., and Anderson, Jared L. 2023. "Isolation of DNA from plant tissues using a miniaturized matrix solid-phase dispersion approach featuring ionic liquid and magnetic ionic liquid solvents ." Analytica Chimica Acta , 1245. https://doi.org/10.1016/j.aca.2023.340858 .
2023
Talavera, Alicia, Nie, Ze-Long, Ma, Zhi-Yao, Johnson, Gabriel, Ickert-Bond, Stefanie, Zimmer, Elizabeth A., and Wen, Jun. 2023. "Phylogenomic analyses using a new 1013-gene Vitaceae bait-set support major groups of North American Vitis ." Molecular phylogenetics and evolution , 186. https://doi.org/10.1016/j.ympev.2023.107866 .
2023
Emaus, Miranda N., Cagliero, Cecilia, Gostel, Morgan R., Johnson, Gabriel, and Anderson, Jared L. 2022. "Simple and efficient isolation of plant genomic DNA using magnetic ionic liquids ." Plant Methods , 18, (1) 37. https://doi.org/10.1186/s13007-022-00860-8 .
2022
Ren, Chen, Wang, Long, Nie, Ze-Long, Johnson, Gabriel, Yang, Qin-Er, and Wen, Jun. 2021. "Development and phylogenetic utilities of a new set of single-/low-copy nuclear genes in Senecioneae (Asteraceae), with new insights into the tribal position and the relationships within subtribe Tussilagininae ." Molecular phylogenetics and evolution , 162. https://doi.org/10.1016/j.ympev.2021.107202 .
2021
Leao, Luis Alfredo S., Bahia, Ricardo G., Jesionek, Michel B., Adey, Walter H., Johnson, Gabriel, Salgado, Leonardo T., and Pereira, Renato C. 2020. "Sporolithon franciscanum sp. nov. (Sporolithales, Rhodophyta), a New Rhodolith-Forming Species from Northeast BrazilDiversity-Basel , 12, (5). https://doi.org/10.3390/d12050199 .
2020
Knope, Matthew L., Funk, Vicki Ann, Johnson, Melissa A., Wagner, Warren L., Datlof, Erin M., Johnson, Gabriel, Crawford, Daniel J., Bonifacino, J. Mauricio, Morden, Clifford W., Lorence, David H., Wood, Kenneth R., Meyer, Jean-Yves, and Carlquist, Sherwin. 2020. "Dispersal and adaptive radiation of Bidens (Compositae) across the remote archipelagoes of Polynesia ." Journal of Systematics and Evolution , 58, (6) 805–822. https://doi.org/10.1111/jse.12704 .
2020
Wen, Jun, Herron, Sterling A., Yang, Xue, Liu, Bin-Bin, Zuo, Yun-Juan, Harris, Aj, Kalburgi, Yash, Johnson, Gabriel, and Zimmer, Elizabeth A. 2020. "Nuclear and Chloroplast Sequences Resolve the Enigmatic Origin of the Concord Grape ." Frontiers in Plant Science , 11 Article 263. https://doi.org/10.3389/fpls.2020.00263 .
2020
Lichter‐Marck, Isaac H., Freyman, William A., Siniscalchi, Carolina M., Mandel, Jennifer R., Castro‐Castro, Arturo, Johnson, Gabriel, and Baldwin, Bruce G. 2020. "Phylogenomics of Perityleae (Compositae) provides new insights into morphological and chromosomal evolution of the rock daisies ." Journal of Systematics and Evolution , 58, (6 (Special Issue)) 853–880. (Collections-Based Systematics and Biogeography in the 21st Century: A Tribute to Dr. Vicki Funk) https://doi.org/10.1111/jse.12711 .
2020
Lorence, David H., Wagner, Warren L., Wood, Kenneth R., and Johnson, Gabriel. 2020. "Pogostemon guamensis Lorence & W.L.Wagner (Lamiaceae), a new species from Guam, Mariana Islands ." PhytoKeys , 169 61–73. https://doi.org/10.3897/phytokeys.169.58107 .
2020
Troia, Angelo, Johnson, Gabriel, and Taylor, W. Carl. 2019. "A contribution to the phylogeny and biogeography of the genus Isoetes (Isoetaceae, Lycopodiidae) in the Mediterranean region." Phytotaxa , 395, (3) 168–178. https://doi.org/10.11646/phytotaxa.395.3.2 .
2019
Johnson, Gabriel. 2019. "High throughput DNA extraction of legume root nodules for rhizobial metagenomics ." AMB Express , 9, (1) 47. https://doi.org/10.1186/s13568-019-0771-z .
2019
Liu, Bin-Bin, Hong, De-Yuan, Zhou, Shi-Liang, Xu, Chao, Dong, Wen-Pan, Johnson, Gabriel, and Wen, Jun. 2019. "Phylogenomic analyses of the Photinia complex support the recognition of a new genus Phippsiomeles and the resurrection of a redefined Stranvaesia in Maleae (Rosaceae) ." Journal of Systematics and Evolution , 57, (6) 678–694. https://doi.org/10.1111/jse.12542 .
2019
Ballantine, David L., Brooks, Barrett L., and Johnson, Gabe P. 2019. "Some rarely reported deep-water macroalgal species from Bonaire, Caribbean Sea, including Verdigellas discoidea sp. nov. (Palmophyllaceae, Chlorophyta) based on submersible collections ." Botanica Marina , 62, (6). https://doi.org/10.1515/bot-2019-0026 .
2019
Shivakumar, Vikram S., Johnson, Gabriel, and Zimmer, Elizabeth A. 2019. "Transcriptome analysis of the curry tree (Bergera koenigii L., Rutaceae) during leaf development ." Scientific Reports , 9 Article 4230. https://doi.org/10.1038/s41598-019-40227-z .
2019
Wen, Jun, Harris, Aj, Kalburgi, Yash, Zhang, Ning, Xu, Yuan, Zheng, Wei, Ickert-Bond, Stefanie M., Johnson, Gabriel, and Zimmer, Elizabeth A. 2018. "Chloroplast phylogenomics of the New World grape species (Vitis, Vitaceae) ." Journal of Systematics and Evolution , 56, (4) 297–308. https://doi.org/10.1111/jse.12447 .
2018
Schafran, Peter W., Johnson, Gabriel, Taylor, W. Carl, Zimmer, Elizabeth A., and Musselman, Lytton J. 2018. "Low-copy nuclear markers in Isoëtes (Isoëtaceae) identified with transcriptomes ." Applications in Plant Sciences , 6, (4). https://doi.org/10.1002/aps3.1142 .
2018
Zhao, Liang, Potter, Daniel, Xu, Yuan, Liu, Pei-Liang, Johnson, Gabriel, Chang, Zhao-Yang, and Wen, Jun. 2018. "Phylogeny and spatio-temporal diversification of Prunus subgenus Laurocerasus section Mesopygeum (Rosaceae) in the Malesian region ." Journal of Systematics and Evolution , 56, (6) 637–651. https://doi.org/10.1111/jse.12467 .
2018
Jiang, Lan, Wang, Qingqing, Yu, Jue, Gowda, Vinita, Johnson, Gabriel, Yang, Jianke, Kan, Xianzhao, and Yang, Xiaojun. 2018. "miRNAome expression profiles in the gonads of adult Melopsittacus undulatus ." PeerJ , 6 e4615. https://doi.org/10.7717/peerj.4615 .
2018
Shivakumar, Vikram S., Appelhans, Marc S., Johnson, Gabriel, Carlsen, Monica, and Zimmer, Elizabeth Anne. 2017. "Analysis of whole chloroplast genomes from the genera of the Clauseneae, the curry tribe (Rutaceae, Citrus family) ." Molecular phylogenetics and evolution , 117 135–140. https://doi.org/10.1016/j.ympev.2016.12.015 .
2017
Acevedo-Rodríguez, Pedro, Wurdack, Kenneth J., Ferrucci, M. S., Johnson, Gabriel, Dias, Pedro, Coelho, Rubens G., Somner, Genise V., Steinmann, Victor W., Zimmer, Elizabeth Anne, and Strong, Mark T. 2017. "Generic Relationships and Classification of Tribe Paullinieae (Sapindaceae) with a New Concept of Supertribe Paulliniodae ." Systematic Botany , 42, (1) 96–114. https://doi.org/10.1600/036364417X694926 .
2017
Shi, Wei, Wen, Jun, Zhao, Yanfeng, Johnson, Gabriel, and Pan, Borong. 2017. "Reproductive biology and variation of nuclear ribosomal ITS and ETS sequences in the Calligonum mongolicum complex (Polygonaceae) ." PhytoKeys , (76) 71–88. https://doi.org/10.3897/phytokeys.76.10428 .
2017
Duan, Lei, Yang, Xue, Liu, Peiliang, Johnson, Gabriel, Wen, Jun, and Chang, Zhaoyang. 2016. "A molecular phylogeny of Caraganeae (Leguminosae, Papilionoideae) reveals insights into new generic and infrageneric delimitations ." PhytoKeys , (70) 111–137. https://doi.org/10.3897/phytokeys.70.9641 .
2016
Schuettpelz, Eric, Chen, Cheng-Wei, Kessler, Michael, Pinson, Jerald B., Johnson, Gabriel, Davila, Alex, Cochran, Alyssa T., Huiet, Layne, and Pryer, Kathleen M. 2016. "A revised generic classification of vittarioid ferns (Pteridaceae) based on molecular, micromorphological, and geographic data." Taxon , 65, (4) 708–722. https://doi.org/10.12705/654.2 .
2016
Bahia, Ricardo G., Amado-Filho, Gilberto, Maneveldt, Gavin W., Adey, Walter H., Johnson, Gabriel, Jesionek, Michel B., and Longo, Leila L. 2015. "Sporolithon yoneshigueae sp. nov. (Sporolithales, Corallinophycidae, Rhodophyta), a new rhodolith-forming coralline alga from the southwest AtlanticPhytotaxa , 224, (2) 140–158. https://doi.org/10.11646/phytotaxa.224.2.2 .
2015
Adey, Walter H., Hernández-Kantún, Jazmin J., Johnson, Gabriel, and Gabrielson, Paul W. 2015. "DNA sequencing, anatomy, and calcification patterns support a monophyletic, subarctic, carbonate reef-forming Clathromorphum (Hapalidiaceae, Corallinales, Rhodophyta) ." Journal of Phycology , 51, (1) 189–203. https://doi.org/10.1111/jpy.12266 .
2015
Laughinghouse, Haywood Dail, Müller, Kirsten M., Adey, Walter H., Lara, Yannick, Young, Robert, and Johnson, Gabriel P. 2015. "Evolution of the Northern Rockweed, Fucus distichus , in a Regime of Glacial Cycling: Implications for Benthic Algal Phylogenetics ." PloS One , 10, (12) 1–17. https://doi.org/10.1371/journal.pone.0143795 .
2015
Bahia, Ricardo G., Amado-Filho, Gilberto, Maneveldt, Gavin W., Adey, Walter H., Johnson, Gabriel, Marins, Bianca V., and Longo, Leila L. 2014. "Sporolithon tenue sp. nov. (Sporolithales, Corallinophycidae, Rhodophyta): A new rhodolith-forming species from the tropical southwestern Atlantic." Phycological Research , 62, (1) 44–54. https://doi.org/10.1111/pre.12033 .
2014
Liu, Xiao-Lin, Wen, Jun, Nie, Ze-Long, Johnson, Gabriel, Liang, Zong-Suo, and Chang, Zhao-Yang. 2013. "Polyphyly of the Padus group of Prunus (Rosaceae) and the evolution of biogeographic disjunctions between eastern Asia and eastern North America ." Journal of Plant Research , 126, (3) 351–361. https://doi.org/10.1007/s10265-012-0535-1 .
2013
Peterson, Paul M., Snow, Neil, Romaschenko, Konstantin, and Johnson, Gabriel P. 2012. "A Molecular Phylogeny and Classification of Leptochloa (Poaceae: Chloridoideae: Chlorideae) Sensu Lato and Related Genera ." Annals of Botany , 109, (7) 1317–1330. https://doi.org/10.1093/aob/mcs077 .
2012
Bacon, Christine D., Johnson, Gabriel P., Meimberg, Harald, Puppo, Pamela, Simmons, Mark P., and Wagner, Warren L. 2011. "Development of microsatellites in the Hawaiian endemic palm Pritchardia martii (Arecaceae) and their utility in congeners ." American Journal of Botany , 98, (6) e139–e140. https://doi.org/10.3732/ajb.1100073 .
2011
Peterson, Paul M., Romaschenko, Konstantin, and Johnson, Gabriel P. 2010. "A classification of the Chloridoideae (Poaceae) based on multi-gene phylogenetic trees ." Molecular phylogenetics and evolution , 55, (2) 580–598. https://doi.org/10.1016/j.ympev.2010.01.018 .
2010
Peterson, Paul M., Romaschenko, Konstantin, and Johnson, Gabriel P. 2010. "A phylogeny and classification of the Muhlenbergiinae (Poaceae: Chloridoideae: Cynodonteae) based on plastid and nuclear DNA sequences ." American Journal of Botany , 97, (9) 1532–1554. https://doi.org/10.3732/ajb.0900359 .
2010
Chin, Siew-Wai, Wen, Jun, Johnson, Gabriel P., and Potter, Dan. 2010. "Merging Maddenia with the morphologically diverse Prunus (Rosaceae) ." Botanical Journal of the Linnean Society , 164, (3) 236–245. https://doi.org/10.1111/j.1095-8339.2010.01083.x .
2010
Johnson, Gabriel P. and Renzaglia, Karen S. 2009. "Evaluating the diversity of pteridophyte embryology in the light of recent phylogenetic analyses leads to new inferences on character evolution." Plant Systematics and Evolution , 283, (3-4) 149–164. https://doi.org/10.1007/s00606-009-0222-4 .
2009
Dataset
Acevedo-Rodríguez, Pedro, Wurdack, Kenneth J., Ferrucci, M. S., Johnson, Gabriel, Dias, Pedro, Coelho, Rubens G., Somner, Genise V., Steinmann, Victor W., Zimmer, Elizabeth Anne, and Strong, Mark T. 2017. [Dataset] Generic Relationships and Classification of Tribe Paullinieae (Sapindaceae) with a New Concept of Supertribe Paulliniodae. Distributed by Dryad. https://doi.org/10.5061/dryad.p2g6p .
2017
0000-0001-7875-9285
