Article

• Lott, Matthew J., Wright, Belinda R., Neaves, Linda E., Frankham, Greta J., Dennison, Siobhan, Eldridge, Mark D. B., Potter, Sally, Alquezar-Planas, David E., Hogg, Carolyn J., Belov, Katherine, and Johnson, Rebecca N. 2022. "Future-proofing the koala: Synergising genomic and environmental data for effective species management." Molecular ecology, 31, (11) 3035–3055. https://doi.org/10.1111/mec.16446. 2022
• Lawniczak, Mara K. N., Durbin, Richard, Flicek, Paul, Lindblad-Toh, Kerstin, Wei, Xiaofeng, Archibald, John M., Baker, William J., Belov, Katherine, Blaxter, Mark L., Bonet, Tomas Marques, Childers, Anna K., Coddington, Jonathan A., Crandall, Keith A., Crawford, Andrew J., Davey, Robert P., Di Palma, Federica, Fang, Qi, Haerty, Wilfried, Hall, Neil, Hoff, Katharina J., Howe, Kerstin, Jarvis, Erich D., Johnson, Warren E., Johnson, Rebecca N., Kersey, Paul J. et al. 2022. "Standards recommendations for the Earth BioGenome Project." Proceedings of the National Academy of Sciences of the United States of America, 119, (4). https://doi.org/10.1073/pnas.2115639118. 2022
• Blaxter, Mark, Archibald, John M., Childers, Anna K., Coddington, Jonathan A., Crandall, Keith A., Di Palma, Federica, Durbin, Richard, Edwards, Scott V., Graves, Jennifer A. M., Hackett, Kevin J., Hall, Neil, Jarvis, Erich D., Johnson, Rebecca N., Karlsson, Elinor K., Kress, W. John, Kuraku, Shigehiro, Lawniczak, Mara K. N., Lindblad-Toh, Kerstin, Lopez, Jose V., Moran, Nancy A., Robinson, Gene E., Ryder, Oliver A., Shapiro, Beth, Soltis, Pamela S., Warnow, Tandy et al. 2022. "Why sequence all eukaryotes?" Proceedings of the National Academy of Sciences of the United States of America, 119, (4). https://doi.org/10.1073/pnas.2115636118. 2022
• Singh, Devika, Sun, Dan, King, Andrew G., Alquezar-Planas, David E., Johnson, Rebecca N., Alvarez-Ponce, David, and Yi, Soojin, V. 2021. "Koala methylomes reveal divergent and conserved DNA methylation signatures of X chromosome regulation." Proceedings of the Royal Society B: Biological Sciences, 288, (1945). https://doi.org/10.1098/rspb.2020.2244. 2021
• Hogg, Carolyn J., Morrison, Caitlin, Dudley, Jessica S., Alquezar-Planas, David E., Beasley-Hall, Perry G., Magrath, Michael J. L., Ho, Simon Y. W., Lo, Nathan, Johnson, Rebecca N., and Grueber, Catherine E. 2021. "Using phylogenetics to explore interspecies genetic rescue options for a critically endangered parrot." Conservation Science and Practice, https://doi.org/10.1111/csp2.483. 2021
• Lott, Matthew J., Wright, Belinda R., Kemp, Leah F., Johnson, Rebecca N., and Hogg, Carolyn J. 2020. "Genetic Management of Captive and Reintroduced Bilby Populations." The Journal of Wildlife Management, 84, (1) 20–32. https://doi.org/10.1002/jwmg.21777. 2020
• Lavery, Tyrone H., Alabai, Masaafi, Esau, Tommy, Fuiberi, Simon, Furina, Di'ifaka, Johnson, Rebecca N., Kekeubata, Esau, MacLaren, David, Waneagea, Jackson, and Flannery, Tim F. 2020. "Integrating traditional knowledge, science and conservation in the search for undescribed mammals on Malaita, Solomon Islands." Pacific Conservation Biology, https://doi.org/10.1071/PC19037. 2020
• Morrison, Caitlin E., Hogg, Carolyn J., Gales, Rosemary, Johnson, Rebecca N., and Grueber, Catherine E. 2020. "Low innate immune-gene diversity in the critically endangered orange-bellied parrot (Neophema chrysogaster)." Emu - Austral Ornithology, 120, (1) 56–64. https://doi.org/10.1080/01584197.2019.1686994. 2020
• Ewart, Kyle M., Lo, Nathan, Ogden, Rob, Joseph, Leo, Ho, Simon Y. W., Frankham, Greta J., Eldridge, Mark D. B., Schodde, Richard, and Johnson, Rebecca N. 2020. "Phylogeography of the iconic Australian red-tailed black-cockatoo ( Calyptorhynchus banksii ) and implications for its conservation." Heredity, 1–16. https://doi.org/10.1038/s41437-020-0315-y. 2020
• Ueland, Maiken, Brown, Amber, Bartos, Cecilia, Frankham, Greta J., Johnson, Rebecca N., and Forbes, Shari L. 2020. "Profiling Volatilomes: A Novel Forensic Method for Identification of Confiscated Illegal Wildlife Items." Separations, 7, (1) 5. https://doi.org/10.3390/separations7010005. 2020
• Johnson, Rebecca N. 2020. "Tuatara genome reveals diverse insights into a remarkable reptile." Nature, 584 351–352. https://doi.org/10.1038/d41586-020-02063-4. 2020
• Mitchell, Andrew, Rothbart, Anna, Frankham, Greta, Johnson, Rebecca N., and Neaves, Linda E. 2019. "Could do better! A high school market survey of fish labelling in Sydney, Australia, using DNA barcodes." PeerJ, 7. https://doi.org/10.7717/peerj.7138. 2019
• Summerell, A. E., Frankham, G. J., Gunn, P., and Johnson, Rebecca N. 2019. "DNA based method for determining source country of the short beaked echidna (Tachyglossus aculeatus) in the illegal wildlife trade." Forensic science international, 295 46–53. https://doi.org/10.1016/j.forsciint.2018.11.019. 2019
• Ward, Jodie, Johnson, Rebecca N., and Wilson-Wilde, Linzi. 2019. "Gender equity: how do the forensic sciences fare?" Australian Journal of Forensic Sciences, 51 S263–S267. https://doi.org/10.1080/00450618.2019.1568556. 2019
• Wright, B. R., Grueber, C. E., Lott, M. J., Belov, K., Johnson, Rebecca N., and Hogg, C. J. 2019. "Impact of reduced-representation sequencing protocols on detecting population structure in a threatened marsupial." Molecular biology reports, 46, (5) 5575–5580. https://doi.org/10.1007/s11033-019-04966-6. 2019
• Ewart, Kyle M., Johnson, Rebecca N., Ogden, Rob, Joseph, Leo, Frankham, Greta J., and Lo, Nathan. 2019. "Museum specimens provide reliable SNP data for population genomic analysis of a widely distributed but threatened cockatoo species." Molecular Ecology Resources, 19, (6) 1578–1592. https://doi.org/10.1111/1755-0998.13082. 2019
• Lo, Nathan, Montagu, Ashley, Noack, Ann, Nahrung, Helen, Wei, Heng, Eldridge, Mark, Gray, Karen-Ann, Rose, Harley A., Cassis, Gerasimos, Johnson, Rebecca N., and Lawson, Simon. 2019. "Population genetics of the Australian eucalypt pest Thaumastocoris peregrinus: evidence for a recent invasion of Sydney." Journal of Pest Science, 92, (1) 201–212. https://doi.org/10.1007/s10340-018-0995-8. 2019
• Jackson, Stephen M., Fleming, Peter Js, Eldridge, Mark Db, Ingleby, Sandy, Flannery, Tim, Johnson, Rebecca N., Cooper, Steven Jb, Mitchell, Kieren J., Souilmi, Yassine, Cooper, Alan, Wilson, Don E., and Helgen, Kristofer M. 2019. "The Dogma of Dingoes-Taxonomic status of the dingo: A reply to Smith et al." Zootaxa, 4564, (1) 198–212. https://doi.org/10.11646/zootaxa.4564.1.7. 2019
• Ewart, Kyle M., Griffin, Andrea S., Johnson, Rebecca N., Kark, Salit, Cohen, Tali Magory, Lo, Nathan, and Major, Richard E. 2019. "Two speed invasion: assisted and intrinsic dispersal of common mynas over 150 years of colonization." Journal of Biogeography, 46, (1) 45–57. https://doi.org/10.1111/jbi.13473. 2019
• Ewart, Kyle M., Frankham, Greta J., McEwing, Ross, The, Dang Tat, Hogg, Carolyn J., Wade, Claire, Lo, Nathan, and Johnson, Rebecca N. 2018. "A rapid multiplex PCR assay for presumptive species identification of rhinoceros horns and its implementation in Vietnam." PLOS ONE, 13, (6). https://doi.org/10.1371/journal.pone.0198565. 2018
• Johnson, Rebecca N., O'Meally, Denis, Chen, Zhiliang, Etherington, Graham J., Ho, Simon Y. W., Nash, Will J., Grueber, Catherine E., Cheng, Yuanyuan, Whittington, Camilla M., Dennison, Siobhan, Peel, Emma, Haerty, Wilfried, O'Neill, Rachel J., Colgan, Don, Russell, Tonia L., Alquezar-Planas, David, Attenbrow, Val, Bragg, Jason G., Brandies, Parice A., Chong, Amanda Yoon-Yee, Deakin, Janine E., Di Palma, Federica, Duda, Zachary, Eldridge, Mark D. B., Ewart, Kyle M. et al. 2018. "Adaptation and conservation insights from the koala genome." Nature genetics, 50, (8) 1102–1111. https://doi.org/10.1038/s41588-018-0153-5. 2018
• Ewart, Kyle M., Frankham, Greta J., McEwing, Ross, Webster, Lucy M. I., Ciavaglia, Sherryn A., Linacre, Adrian M. T., The, Dang Tat, Ovouthan, Kanitia, and Johnson, Rebecca N. 2018. "An internationally standardized species identification test for use on suspected seized rhinoceros horn in the illegal wildlife trade." Forensic Science International: Genetics, 32 33–39. https://doi.org/10.1016/j.fsigen.2017.10.003. 2018
• Duchêne, David A., Bragg, Jason G., Duchêne, Sebastián, Neaves, Linda E., Potter, Sally, Moritz, Craig, Johnson, Rebecca N., Ho, Simon Y. W., and Eldridge, Mark D. B. 2018. "Analysis of Phylogenomic Tree Space Resolves Relationships Among Marsupial Families." Systematic Biology, 67, (3) 400–412. https://doi.org/10.1093/sysbio/syx076. 2018
• Löber, Ulrike, Hobbs, Matthew, Dayaram, Anisha, Tsangaras, Kyriakos, Jones, Kiersten, Alquezar-Planas, David, Ishida, Yasuko, Meers, Joanne, Mayer, Jens, Quedenau, Claudia, Chen, Wei, Johnson, Rebecca N., Timms, Peter, Young, Paul R., Roca, Alfred L., and Greenwood, Alex D. 2018. "Degradation and remobilization of endogenous retroviruses by recombination during the earliest stages of a germ-line invasion." Proceedings of the National Academy of Sciences of the United States of America, 115, (34) 8609–8614. https://doi.org/10.1073/pnas.1807598115. 2018
• Eldridge, Mark D. B., Potter, Sally, Helgen, Kristofer M., Sinaga, Martua H., Aplin, Ken P., Flannery, Tim F., and Johnson, Rebecca N. 2018. "Phylogenetic analysis of the tree-kangaroos (Dendrolagus) reveals multiple divergent lineages within New Guinea." Molecular phylogenetics and evolution, 127 589–599. https://doi.org/10.1016/j.ympev.2018.05.030. 2018
• Hogg, Carolyn J., Dennison, Siobhan, Frankham, Greta J., Hinds, Meagan, and Johnson, Rebecca N. 2018. "Stopping the spin cycle: genetics and bio-banking as a tool for addressing the laundering of illegally caught wildlife as 'captive-bred'." Conservation Genetics Resources, 10, (2) 237–246. https://doi.org/10.1007/s12686-017-0784-3. 2018
• Neaves, Linda E., Danks, Melissa, Lott, Matthew J., Dennison, Siobhan, Frankham, Greta J., King, Andrew, Eldridge, Mark D. B., Johnson, Rebecca N., and Divljan, Anja. 2018. "Unmasking the complexity of species identification in Australasian flying-foxes." PLOS ONE, 13, (4). https://doi.org/10.1371/journal.pone.0194908. 2018
• Ahlers, N., Creecy, J., Frankham, G., Johnson, Rebecca N., Kotze, A., Linacre, A., McEwing, R., Mwale, M., Rovie-Ryan, J., Sitam, F., and Webster, L. M. I. 2017. "'ForCyt' DNA database of wildlife species." Forensic Science International: Genetics Supplement Series, 6 e466–e468. https://doi.org/10.1016/j.fsigss.2017.09.195. 2017
• Hobbs, Matthew, King, Andrew, Salinas, Ryan, Chen, Zhiliang, Tsangaras, Kyriakos, Greenwood, Alex D., Johnson, Rebecca N., Belov, Katherine, Wilkins, Marc R., and Timms, Peter. 2017. "Long-read genome sequence assembly provides insight into ongoing retroviral invasion of the koala germline." Scientific Reports, 7, (1). https://doi.org/10.1038/s41598-017-16171-1. 2017
• Dennison, S., Frankham, G. J., Neaves, L. E., Flanagan, C., FitzGibbon, S., Eldridge, M. D. B., and Johnson, Rebecca N. 2017. "Population genetics of the koala (Phascolarctos cinereus) in north-eastern New South Wales and south-eastern Queensland." Australian Journal of Zoology, 64, (6) 402–412. https://doi.org/10.1071/ZO16081. 2017
• Eldridge, Mark D. B., Divljan, Anja, Ingleby, Sandy, Johnson, Rebecca N., King, Andrew G., Major, Richard E., Parnaby, Harry E., and Tsang, Leah. 2017. "The Australian Museum Lord Howe Island Expedition 2017-birds and mammals." Technical Reports of the Australian Museum (online), 26 25–43. https://doi.org/10.3853/j.1835-4211.26.2017.1704. 2017
• Ueland, Maiken, Ewart, Kyle, Troobnikoff, Amanda N., Frankham, Greta, Johnson, Rebecca N., and Forbes, Shari L. 2016. "A rapid chemical odour profiling method for the identification of rhinoceros horns." Forensic science international, 266 e99–e102. https://doi.org/10.1016/j.forsciint.2016.05.011. 2016
• Cui, Pin, Löber, Ulrike, Alquezar-Planas, David, Ishida, Yasuko, Courtiol, Alexandre, Timms, Peter, Johnson, Rebecca N., Lenz, Dorina, Helgen, Kristofer M., Roca, Alfred L., Hartman, Stefanie, and Greenwood, Alex D. 2016. "Comprehensive profiling of retroviral integration sites using target enrichment methods from historical koala samples without an assembled reference genome." PeerJ, 4 e1847. https://doi.org/10.7717/peerj.1847. 2016
• Neaves, Linda E., Frankham, Greta J., Dennison, Siobhan, FitzGibbon, Sean, Flannagan, Cheyne, Gillett, Amber, Hynes, Emily, Handasyde, Kathrine, Helgen, Kristofer M., Tsangaras, Kyriakos, Greenwood, Alex D., Eldridge, Mark D. B., and Johnson, Rebecca N. 2016. "Phylogeography of the Koala, (Phascolarctos cinereus), and Harmonising Data to Inform Conservation." PLOS ONE, 11, (9) 1–22. https://doi.org/10.1371/journal.pone.0162207. 2016