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Johnson, Warren E.

National Zoological Park staff

Positions

Geographic Focus

Background And Education

Education And Training

Awards And Honors

Research And Grants

Publications

Selected Publications

  • Article

    • Barnett, Ross, Westbury, Michael V., Sandoval-Velasco, Marcela, Vieira, Filipe Garrett, Jeon, Sungwon, Zazula, Grant, Martin, Michael D., Ho, Simon Y. W., Mather, Niklas, Gopalakrishnan, Shyam, Ramos-Madrigal, Jazmin, de Manuel, Marc, Zepeda-Mendoza, M. Lisandra, Antunes, Agostinho, Baez, Aldo Carmona, De Cahsan, Binia, Larson, Greger, O'Brien, Stephen J., Eizirik, Eduardo, Johnson, Warren E., Koepfli, Klaus-Peter, Wilting, Andreas, Fickel, Jorns, Dalen, Love, Lorenzen, Eline D. et al. 2020. "Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens." Current Biology 30 (24):https://doi.org/10.1016/j.cub.2020.09.051 2024
    • Varas, Valeria, Pablo Vasquez, Juan, Rivera, Romina, Longo, Andrea, Valdecantos, Pablo A., Wheeler, Jane C., Johnson, Warren E., and Carlos Marin, Juan. 2020. "Interbreeding among South American camelids threatens species integrity." Journal of Arid Environments 181:104249-104249. https://doi.org/10.1016/j.jaridenv.2020.104249 2024
    • de Manuel, Marc, Barnett, Ross, Sandoval-Velasco, Marcela, Yamaguchi, Nobuyuki, Vieira, Filipe Garrett, Mendoza, M. Lisandra Zepeda, Liu, Shiping, Martin, Michael D., Sinding, Mikkel-Holger S., Mak, Sarah S. T., Caroe, Christian, Liu, Shanlin, Guo, Chunxue, Zheng, Jiao, Zazula, Grant, Baryshnikov, Gennady, Eizirik, Eduardo, Koepfli, Klaus-Peter, Johnson, Warren E., Antunes, Agostinho, Sicheritz-Ponten, Thomas, Gopalakrishnan, Shyam, Larson, Greger, Yang, Huanming, O'Brien, Stephen J. et al. 2020. "The evolutionary history of extinct and living lions." Proceedings of the National Academy of Sciences of the United States of America 117 (20):10927-10934. https://doi.org/10.1073/pnas.1919423117 2024
    • González, Benito A., Agapito, Ana María, Novoa-Muñoz, Francisco, Vianna, Juliana, Johnson, Warren E., and Marín, Juan Carlos. 2020. "Utility of genetic variation in coat color genes to distinguish wild, domestic and hybrid South American camelids for forensic and judicial applications." Forensic Science International.Genetics 45:Article 10226. https://doi.org/10.1016/j.fsigen.2019.102226 2024
    • Ramirez, Jorge L., Lescroart, Jonas, Figueiro, Henrique, V., Torres-Florez, Juan Pablo, Villela, Priscilla M. S., Coutinho, Luiz L., Freitas, Patricia D., Johnson, Warren E., Antunes, Agostinho, Galetti, Pedro M., and Eizirik, Eduardo. 2022. "Genomic Signatures of Divergent Ecological Strategies in a Recent Radiation of Neotropical Wild Cats." Molecular biology and evolution, 39, (6). https://doi.org/10.1093/molbev/msac117. 2022
    • Paez, Sadye, Kraus, Robert H. S., Shapiro, Beth, Gilbert, M. T., Jarvis, Erich D., Vertebrate Genomes Project, Conservation Group, Al-Ajli, Farooq, Ceballos, Gerardo, Crawford, Andrew J., Fedrigo, Olivier, Johnson, Rebecca N., Johnson, Warren E., Marques-Bonet, Tomas, Morin, Phillip A., Mueller, Ralf C., Ryder, Oliver A., Teeling, Emma C., and Venkatesh, Byrappa. 2022. "Reference genomes for conservation." Science, 377, (6604) 364–366. https://doi.org/10.1126/science.abm8127. 2022
    • Lawniczak, Mara K. N., Durbin, Richard, Flicek, Paul, Lindblad-Toh, Kerstin, Wei, Xiaofeng, Archibald, John M., Baker, William J., Belov, Katherine, Blaxter, Mark L., Bonet, Tomas Marques, Childers, Anna K., Coddington, Jonathan A., Crandall, Keith A., Crawford, Andrew J., Davey, Robert P., Di Palma, Federica, Fang, Qi, Haerty, Wilfried, Hall, Neil, Hoff, Katharina J., Howe, Kerstin, Jarvis, Erich D., Johnson, Warren E., Johnson, Rebecca N., Kersey, Paul J. et al. 2022. "Standards recommendations for the Earth BioGenome Project." Proceedings of the National Academy of Sciences of the United States of America, 119, (4). https://doi.org/10.1073/pnas.2115639118. 2022
    • Lewin, Harris A., Richards, Stephen, Lieberman Aiden, Erez, Allende, Miguel L., Archibald, John M., Bálint, Miklós, Barker, Katharine B., Baumgartner, Bridget, Belov, Katherine, Bertorelle, Giorgio, Blaxter, Mark L., Cai, Jing, Caperello, Nicolette D., Carlson, Keith, Castilla-Rubio, Juan, Chaw, Shu-Miaw, Chen, Lei, Childers, Anna K., Coddington, Jonathan A., Conde, Dalia A., Corominas, Montserrat, Crandall, Keith A., Crawford, Andrew J., DiPalma, Federica, Durbin, Richard et al. 2022. "The Earth BioGenome Project 2020: Starting the clock." Proceedings of the National Academy of Sciences of the United States of America, 119, (4). https://doi.org/10.1073/pnas.2115635118. 2022
    • Bursell, Madeline G., Dikow, Rebecca B., Figueiró, Henrique V., Dudchenko, Olga, Flanagan, Joseph P., Aiden, Erez Lieberman, Goossens, Benoit, Nathan, Senthilvel K. S. S., Johnson, Warren E., Koepfli, Klaus-Peter, and Frandsen, Paul B. 2022. "Whole genome analysis of clouded leopard species reveals an ancient divergence and distinct demographic histories." iScience, 25, (12) 105647. https://doi.org/10.1016/j.isci.2022.105647. 2022
    • Mesas, Andres, Cuellar-Soto, Erika, Romero, Karina, Zegers, Trinidad, Varas, Valeria, Gonzalez, Benito A., Johnson, Warren E., and Marin, Juan C. 2021. "Assessing patterns of genetic diversity and connectivity among guanacos (Lama guanicoe) in the Bolivian Chaco: implications for designing management strategies." Studies on Neotropical Fauna and Environment https://doi.org/10.1080/01650521.2021.1914294 2021
    • Sacristan, Irene, Acuna, Francisca, Aguilar, Emilio, Garcia, Sebastian, Jose Lopez, Maria, Cabello, Javier, Hidalgo-Hermoso, Ezequiel, Sanderson, Jim, Terio, Karen A., Barrs, Vanessa, Beatty, Julia, Johnson, Warren E., Millan, Javier, Poulin, Elie, and Napolitano, Constanza. 2021. "Cross-species transmission of retroviruses among domestic and wild felids in human-occupied landscapes in Chile." Evolutionary Applications, 1070–1082. 14, (4), Hoboken, New Jersey: Wiley. https://doi.org/10.1111/eva.13181. 2021
    • Mesas, Andrés, Baldi, Ricardo, González, Benito A., Burgi, Virginia, Chávez, Alexandra, Johnson, Warren E., and Marín, Juan C. 2021. "Past and Recent Effects of Livestock Activity on the Genetic Diversity and Population Structure of Native Guanaco Populations of Arid Patagonia." Animals 11 (5):https://doi.org/10.3390/ani11051218 2021
    • Rhie, Arang, McCarthy, Shane A., Fedrigo, Olivier, Damas, Joana, Formenti, Giulio, Koren, Sergey, Uliano-Silva, Marcela, Chow, William, Fungtammasan, Arkarachai, Kim, Juwan, Lee, Chul, Ko, Byung June, Chaisson, Mark, Gedman, Gregory L., Cantin, Lindsey J., Thibaud-Nissen, Francoise, Haggerty, Leanne, Bista, Iliana, Smith, Michelle, Haase, Bettina, Mountcastle, Jacquelyn, Winkler, Sylke, Paez, Sadye, Howard, Jason, Vernes, Sonja C. et al. 2021. "Towards complete and error-free genome assemblies of all vertebrate species." Nature, 592, (7856), 737. BERLIN; HEIDELBERGER PLATZ 3, BERLIN, 14197, GERMANY: NATURE RESEARCH, https://doi.org/10.1038/s41586-021-03451-0. 2021
    • Sacristán, I., Acuña, F., Aguilar, E., García, S., López, M. J., Cevidanes, A., Cabello, J., Hidalgo-Hermoso, E., Johnson, Warren E., Poulin, E., Millán, J., and Napolitano, C. 2019. "Assessing cross-species transmission of hemoplasmas at the wild-domestic felid interface in Chile using genetic and landscape variables analysis." Scientific Reports 9 (1):Article 16816. https://doi.org/10.1038/s41598-019-53184-4 2019
    • Saremi, Nedda F., Supple, Megan A., Byrne, Ashley, Cahill, James A., Coutinho, Luiz Lehmann, Dalén, Love, Figueiró, Henrique V., Johnson, Warren E., Milne, Heather J., O'Brien, Stephen J., O'Connell, Brendan, Onorato, David P., Riley, Seth P. D., Sikich, Jeff A., Stahler, Daniel R., Villela, Priscilla Marqui Schmidt, Vollmers, Christopher, Wayne, Robert K., Eizirik, Eduardo, Corbett-Detig, Russell, Green, Richard E., Wilmers, Christopher C., and Shapiro, Beth. 2019. "Author Correction: Puma genomes from North and South America provide insights into the genomic consequences of inbreeding." Nature Communications, 10 Article 5276. https://doi.org/10.1038/s41467-019-13096-3. 2019
    • Borges, Rui, Fonseca, João, Gomes, Cidália, Johnson, Warren E., O'Brien, Stephen J., Zhang, Guojie, Gilbert, M. T., Jarvis, Erich D., and Antunes, Agostinho. 2019. "Avian binocularity and adaptation to nocturnal environments: genomic insights from a highly-derived visual phenotype." Genome Biology and Evolution 11 (8):2244-2255. https://doi.org/10.1093/gbe/evz111 2019
    • Farré, Marta, Kim, Jaebum, Proskuryakova, Anastasia A., Zhang, Yang, Kulemzina, Anastasia I., Li, Qiye, Zhou, Yang, Xiong, Yingqi, Johnson, Jennifer L., Perelman, Polina, Johnson, Warren E., Warren, Wesley C., Kukekova, Anna V., Zhang, Guojie, O'Brien, Stephen J., Ryder, Oliver A., Graphodatsky, Alexander S., Ma, Jian, Lewin, Harris A., and Larkin, Denis M. 2019. "Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks." Genome research 29:576-589. https://doi.org/10.1101/gr.239863.118 2019
    • Elbers, Jean P., Rogers, Mark F., Perelman, Polina L., Proskuryakova, Anastasia A., Serdyukova, Natalia A., Johnson, Warren E., Horin, Petr, Corander, Jukka, Murphy, David, and Burger, Pamela A. 2019. "Improving Illumina assemblies with Hi-C and long reads: an example with the North African dromedary." Molecular Ecology Resources 19 (4):1015-1026. https://doi.org/10.1111/1755-0998.13020 2019
    • Saremi, Nedda F., Supple, Megan A., Byrne, Ashley, Cahill, James A., Coutinho, Luiz Lehmann, Dalén, Love, Figueiró, Henrique V., Johnson, Warren E., Milne, Heather J., O'Brien, Stephen J., O'Connell, Brendan, Onorato, David P., Riley, Seth P. D., Sikich, Jeff A., Stahler, Daniel R., Villela, Priscilla Marqui Schmidt, Vollmers, Christopher, Wayne, Robert K., Eizirik, Eduardo, Corbett-Detig, Russell, Green, Richard E., Wilmers, Christopher C., and Shapiro, Beth. 2019. "Puma genomes from North and South America provide insights into the genomic consequences of inbreeding." Nature Communications, 10, (1) Article 4769. https://doi.org/10.1038/s41467-019-12741-1. 2019
    • Khan, Imran, Maldonado, Emanuel, Silva, Liliana, Almeida, Daniela, Johnson, Warren E., O'Brien, Stephen J., Zhang, Guojie, Jarvis, Erich D., Gilbert, M. Thomas P., and Antunes, Agostinho. 2019. "The Vertebrate TLR Supergene Family Evolved Dynamically by Gene Gain/Loss and Positive Selection Revealing a Host-Pathogen Arms Race in Birds." Diversity-Basel 11 (8):https://doi.org/10.3390/d11080131 2019
    • Koepfli, Klaus-Peter, Tamazian, Gaik, Wildt, David E., Dobrynin, Pavel, Kim, Changhoon, Frandsen, Paul B., Godinho, Raquel, Yurchenko, Andrey A., Komissarov, Aleksey, Krasheninnikova, Ksenia, Kliver, Sergei, Kolchanova, Sofia, Gonçalves, Margarida, Carneiro, Miguel, Vaz Pinto, Pedro, Ferrand, Nuno, Maldonado, Jesús E., Ferrie, Gina M., Chemnick, Leona, Ryder, Oliver A., Johnson, Warren E., Comizzoli, Pierre, O'Brien, Stephen J., and Pukazhenthi, Budhan S. 2019. "Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A Resource for Monitoring Diversity in ex Situ and in Situ Populations." G3 (Bethesda, Md.), 9, (6) 1785–1793. https://doi.org/10.1534/g3.119.400084. 2019
    • Borges, Rui, Johnson, Warren E., O'Brien, Stephen J., Gomes, Cidalia, Heesy, Christopher P., and Antunes, Agostinho. 2018. "Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments." Bmc Genomics 19:121-121. https://doi.org/10.1186/s12864-017-4417-8 2018
    • Schmidt-Küntzel, Anne, Dalton, Desiré L., Menotti-Raymond, Marilyn, Fabiano, Ezequiel, Charruau, Pauline, Johnson, Warren E., Sommer, Simone, Marker, Laurie, Kotzé, Antoinette, and O'Brien, Stephen J. 2018. "Conservation Genetics of the Cheetah: Genetic History and Implications for Conservation." in Cheetahs: Biology and Conservation, 71-92. Elsevier. https://doi.org/10.1016/B978-0-12-804088-1.00006-X 2018
    • Lewin, Harris A., Robinson, Gene E., Kress, W. John, Baker, William J., Coddington, Jonathan, Crandall, Keith A., Durbin, Richard, Edwards, Scott V., Forest, Felix, Gilbert, M. Thomas P., Goldstein, Melissa M., Grigoriev, Igor V., Hackett, Kevin J., Haussler, David, Jarvis, Erich D., Johnson, Warren E., Patrinos, Aristides, Richards, Stephen, Castilla-Rubio, Juan Carlos, van Sluys, Marie-Anne, Soltis, Pamela S., Xu, Xun, Yang, Huanming, and Zhang, Guojie. 2018. "Earth BioGenome Project: Sequencing life for the future of life." Proceedings of the National Academy of Sciences of the United States of America, 115, (17) 4325–4333. https://doi.org/10.1073/pnas.1720115115. 2018
    • Johnson, Warren E. 2018. "Genetic variation in coat colour genes MC1R and ASIP provides insights into domestication and management of South American camelids." Frontiers in Genetics 9:487. https://doi.org/10.3389/fgene.2018.00487 2018
    • Ramos, Barbara, Gonzalez-Acuna, Daniel, Loyola, David E., Johnson, Warren E., Parker, Patricia G., Massaro, Melanie, Dantas, Gisele P. M., Miranda, Marcelo D., and Vianna, Juliana A. 2018. "Landscape genomics: natural selection drives the evolution of mitogenome in penguins." BMC Genomics 19:53-53. https://doi.org/10.1186/s12864-017-4424-9 2018
    • Gaubert, Philippe, Antunes, Agostinho, Meng, Hao, Miao, Lin, Peigné, Stéphane, Justy, Fabienne, Njiokou, Flobert, Dufour, Sylvain, Danquah, Emmanuel, Alahakoon, Jayanthi, Verheyen, Erik, Stanley, William T., O'Brien, Stephen J., Johnson, Warren E., and Luo, Shu-Jin. 2018. "The complete phylogeny of pangolins: scaling up resources for the molecular tracing of the most trafficked mammals on Earth." The Journal of heredity 109 (4):347-359. https://doi.org/10.1093/jhered/esx097 2018
    • Kitchener, A. C., Breitenmoser-Würsten, C., Eizirik, E., Gentry, A., Werdelin, Lars, Wilting, A., Yamaguchi, N., Abramov, A. V., Christiansen, P., Driscoll, C., Duckworth, J. W., Johnson, Warren E., Luo, S. J., Meijaard, E., O'Donoghue, P., Sanderson, J., Seymour, K., Bruford, M., Groves, C., Hoffmann, M., Nowell, K., Timmons, Z., and Tobe, S. 2017. "A revised taxonomy of the Felidae : The final report of the Cat Classification Task Force of the IUCN Cat Specialist Group." Cat News 2017
    • OBrien, Stephen J., Johnson, Warren E., Driscoll, Carlos A., Dobrynin, Pavel, and Marker, Laurie. 2017. "Conservation Genetics of the cheetah-Lessons Learned and New Opportunities." The Journal of Heredity 108 (6):671-677. https://doi.org/10.1093/jhered/esx047 2017
    • Lee, Mu-Yeong, Kwon, In-Ki, Lee, Kisup, Choi, Sung Kyoung, Jeon, Hey Sook, Lee, Ji-Yeon, Eo, Kyung-yeon, Kim, Hwa-Jung, Kim, Jin-Han, Johnson, Warren E., Yoo, Jeong-Chil, and An, Junghwa. 2017. "Genetic diversity and population structure of the Black-faced Spoonbill (Platalea minor) among its breeding sites in South Korea: Implication for conservation." Biochemical systematics and ecology 71:106-113. https://doi.org/10.1016/j.bse.2017.01.014 2017
    • Torres-Florez, Juan, Johnson, Warren E., Nery, Mariana F., Eizirik, Eduardo, Oliveira-Miranda, Mar, and Galetti, Pedro Manoel. 2017. "The coming of age of conservation genetics in Latin America: what has been achieved and what needs to be done." Conservation Genetics 1-15. https://doi.org/10.1007/s10592-017-1006-y 2017
    • Marín, J. C., Romero, K., Rivera, R., Johnson, Warren E., and González, B. A. 2017. "Y-chromosome and mtDNA variation confirms independent domestications and directional hybridization in South American camelids." Animal Genetics 48 (5):591-595. https://doi.org/10.1111/age.12570 2017
    • Machado, João Paulo, Johnson, Warren E., Gilbert, M. T., Zhang, Guojie, Jarvis, Erich D., O'Brien, Stephen J., and Antunes, Agostinho. 2016. "Bone-associated gene evolution and the origin of flight in birds." BMC Genomics 17 (1):1-15. https://doi.org/10.1186/s12864-016-2681-7 2016
    • Terrell, Kimberly A., Crosier, Adrienne E., Wildt, David E., O'Brien, Stephen J., Anthony, Nicola M., Marker, Laurie, and Johnson, Warren E. 2016. "Continued decline in genetic diversity among wild cheetahs (Acinonyx jubatus) without further loss of semen quality." Biological Conservation, 200 192–199. https://doi.org/10.1016/j.biocon.2016.05.034. 2016
    • Tchaicka, Ligia, Freitas, Thales Renato Ochotorena de, Bager, Alex, Vidal, Stela Luengos, Lucherini, Mauro, Iriarte, Agustín, Novaro, Andres, Geffen, Eli, Garcez, Fabricio Silva, Johnson, Warren E., Wayne, Robert K., and Eizirik, Eduardo. 2016. "Molecular assessment of the phylogeny and biogeography of a recently diversified endemic group of South American canids (Mammalia: Carnivora: Canidae)." Genetics and Molecular Biology 39 (3):442-451. https://doi.org/10.1590/1678-4685-GMB-2015-0189 2016
    • Tan, Tze King, Tan, Ka Yun, Hari, Ranjeev, Mohamed Yusoff, Aini, Wong, Guat Jah, Siow, Cheuk Chuen, Mutha, Naresh V. R., Rayko, Mike, Komissarov, Aleksey, Dobrynin, Pavel, Krasheninnikova, Ksenia, Tamazian, Gaik, Paterson, Ian C., Warren, Wesley C., Johnson, Warren E., O'Brien, Stephen J., and Choo, Siew Woh. 2016. "PGD: a pangolin genome hub for the research community." Database: The Journal of Biological Databases and Curation 2016 (0):https://doi.org/10.1093/database/baw063 2016
    • Choo, Siew Woh, Rayko, Mike, Tan, Tze King, Hari, Ranjeev, Komissarov, Aleksey, Wee, Wei Yee, Yurchenko, Andrey A., Kliver, Sergey, Tamazian, Gaik, Antunes, Agostinho, Wilson, Richard K., Warren, Wesley C., Koepfli, Klaus-Peter, Minx, Patrick, Krasheninnikova, Ksenia, Kotze, Antoinette, Dalton, Desire L., Vermaak, Elaine, Paterson, Ian C., Dobrynin, Pavel, Sitam, Frankie Thomas, Rovie-Ryan, Jeffrine, Johnson, Warren E., Yusoff, Aini Mohamed, Luo, Shu-Jin et al. 2016. "Pangolin genomes and the evolution of mammalian scales and immunity." Genome research 26 (10):1312-1322. https://doi.org/10.1101/gr.203521.115 2016
    • Lee, Mu-Yeong, Lee, Seon-Mi, Song, Eui-Geun, An, Jung Hwa, Voloshina, Inna, Chong, Jong Royl, Johnson, Warren E., Min, Mi-Sook, and Lee, Hang. 2016. "Phylogenetic relationships and genetic diversity of badgers from the Korean Peninsula: Implications for the taxonomic status of the Korean badger." Biochemical systematics and ecology 69:18-26. https://doi.org/10.1016/j.bse.2016.07.015 2016
    • Machado, João Paulo, Philip, Siby, Maldonado, Emanuel, O'Brien, Stephen J., Johnson, Warren E., and Antunes, Agostinho. 2016. "Positive Selection Linked with Generation of Novel Mammalian Dentition Patterns." Genome Biology and Evolution 8 (9):2748-2759. https://doi.org/10.1093/gbe/evw200 2016
    • O'Brien, Stephen J., Koepfli, Klaus Peter, Eizirik, Eduardo, Johnson, Warren E., Driscoll, Carlos, Antunes, Agostinho, Schmidt-Kuntzel, Anne, Marker, Laurie, and Dobrynin, Pavel. 2016. "Response to Comment by Faurby, Werdelin and Svenning." Genome biology 17 (1):90. https://doi.org/10.1186/s13059-016-0942-z 2016
    • Almeida, Daniela, Maldonado, Emanuel, Khan, Imran, Silva, Liliana, Gilbert, M. T., Zhang, Guojie, Jarvis, Erich D., O'Brien, Stephen J., Johnson, Warren E., and Antunes, Agostinho. 2016. "Whole-Genome Identification, Phylogeny, and Evolution of the Cytochrome P450 Family 2 (CYP2) Subfamilies in Birds." Genome Biology and Evolution 8 (4):1115-1131. https://doi.org/10.1093/gbe/evw041 2016
    • Avila, Felipe, Baily, Malorie P., Perelman, Polina, Das, Pranab J., Pontius, Joan, Chowdhary, Renuka, Owens, Elaine, Johnson, Warren E., Merriwether, David A., and Raudsepp, Terje. 2015. "A Comprehensive Whole-Genome Integrated Cytogenetic Map for the Alpaca (Lama pacos)." Cytogenetic and Genome Research 144 (3):196-207. https://doi.org/10.1159/000370329 2015
    • Borges, Rui, Khan, Imran, Johnson, Warren E., Gilbert, M. T., Zhang, Guojie, Jarvis, Erich D., O'Brien, Stephen J., and Antunes, Agostinho. 2015. "Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds." BMC Genomics 16 (1):751. https://doi.org/10.1186/s12864-015-1924-3 2015
    • Baginsky, Cecilia, Brito, Belen, Scherson, Rosita, Pertuze, Ricardo, Seguel, Oscar, Canete, Alejandro, Araneda, Cristian, and Johnson, Warren E. 2015. "Genetic diversity of Rhizobium from nodulating beans grown in a variety of Mediterranean climate soils of Chile." Archives of Microbiology, 419–429. 197, (3), NEW YORK; ONE NEW YORK PLAZA, SUITE 4600, NEW YORK, NY, UNITED STATES: SPRINGER. https://doi.org/10.1007/s00203-014-1067-y. 2015
    • Koepfli, Klaus-Peter, Pollinger, John, Godinho, Raquel, Robinson, Jacqueline, Lea, Amanda, Hendricks, Sarah, Schweizer, Rena M, Thalmann, Olaf, Silva, Pedro, Fan, Zhenxin, Yurchenko, Andrey A, Dobrynin, Pavel, Makunin, Alexey, Cahill, James A, Shapiro, Beth, Álvares, Francisco, Brito, José C, Geffen, Eli, Leonard, Jennifer A, Helgen, Kristofer M., Johnson, Warren E., O'Brien, Stephen J, Van Valkenburgh, Blaire, and Wayne, Robert K. 2015. "Genome-wide Evidence Reveals that African and Eurasian Golden Jackals Are Distinct Species." Current Biology 25 (16):2158-2165. https://doi.org/10.1016/j.cub.2015.06.060 2015
    • Dobrynin, Pavel, Liu, Shiping, Tamazian, Gaik, Xiong, Zijun, Yurchenko, Andrey A., Krasheninnikova, Ksenia, Kliver, Sergey, Schmidt-Küntzel, Anne, Koepfli, Klaus-Peter, Johnson, Warren E., Kuderna, Lukas F. K., García-Pérez, Raquel, Manuel, Marc de, Godinez, Ricardo, Komissarov, Aleksey, Makunin, Alexey, Brukhin, Vladimir, Qiu, Weilin, Zhou, Long, Li, Fang, Yi, Jian, Driscoll, Carlos, Antunes, Agostinho, Oleksyk, Taras K., Eizirik, Eduardo et al. 2015. "Genomic legacy of the African cheetah, Acinonyx jubatus." Genome biology 16:277. https://doi.org/10.1186/s13059-015-0837-4 2015
    • Khan, Imran, Yang, Zhikai, Maldonado, Emanuel, Li, Cai, Zhang, Guojie, Gilbert, M. T., Jarvis, Erich D., O'Brien, Stephen J., Johnson, Warren E., and Antunes, Agostinho. 2015. "Olfactory receptor subgenomes linked with broad ecological adaptations in Sauropsida." Molecular biology and evolution 32 (11):2832-2843. https://doi.org/10.1093/molbev/msv155 2015
    • Napolitano, Constanza, Díaz, Diego, Sanderson, Jim, Johnson, Warren E., Ritland, Kermit, Ritland, Carol E., and Poulin, Elie. 2015. "Reduced Genetic Diversity and Increased Dispersal in Guigna (Leopardus guigna) in Chilean Fragmented Landscapes." The Journal of Heredity 106:522-536. https://doi.org/10.1093/jhered/esv025 2015
    • Johnson, Warren E. 2014. "Camelid Genetics and Reproductive Biotechnologies." The Journal of Heredity 105 (6):931-932. https://doi.org/10.1093/jhered/esu069 2014
    • Zhang, Guojie, Li, Cai, Li, Qiye, Li, Bo, Larkin, Denis M., Lee, Chul, Storz, Jay F., Antunes, Agostinho, Greenwold, Matthew J., Meredith, Robert W., Ödeen, Anders, Cui, Jie, Zhou, Qi, Xu, Luohao, Pan, Hailin, Wang, Zongji, Jin, Lijun, Zhang, Pei, Hu, Haofu, Yang, Wei, Hu, Jiang, Xiao, Jin, Yang, Zhikai, Liu, Yang, Xie, Qiaolin et al. 2014. "Comparative genomics reveals insights into avian genome evolution and adaptation." Science, 346, (6215) 1311–1320. https://doi.org/10.1126/science.1251385. 2014
    • Pereira, Joana, Johnson, Warren E., O'Brien, Stephen J., Jarvis, Erich D., Zhang, Guojie, Gilbert, M. T., Vasconcelos, Vitor, and Antunes, Agostinho. 2014. "Evolutionary genomics and adaptive evolution of the hedgehog gene family (Shh, Ihh and Dhh) in vertebrates." PloS One 9 (12):1-35. https://doi.org/10.1371/journal.pone.0074132 2014
    • Baginsky, Cecilia, Brito, Belén, Scherson, Rosita, Pertuzé, Ricardo, Seguel, Oscar, Cañete, Alejandro, Araneda, Cristian, and Johnson, Warren E. 2014. "Genetic diversity of Rhizobium from nodulating beans grown in a variety of Mediterranean climate soils of Chile." Archives of Microbiology 1-11. https://doi.org/10.1007/s00203-014-1067-y 2014
    • González, Benito A., Orozco-terWengel, Pablo, von Borries, Rainer, Johnson, Warren E., Franklin, William L., and Marín, Juan C. 2014. "Maintenance of Genetic Diversity in an Introduced Island Population of Guanacos after Seven Decades and Two Severe Demographic Bottlenecks: Implications for Camelid Conservation." PLoS ONE 9 (3):1-13. https://doi.org/10.1371/journal.pone.0091714 2014
    • Khan, Imran, Maldonado, Emanuel, Vasconcelos, Vitor, O'Brien, Stephen J., Johnson, Warren E., and Antunes, Agostinho. 2014. "Mammalian keratin associated proteins (KRTAPs) subgenomes: disentangling hair diversity and adaptation to terrestrial and aquatic environments." BMC Genomics 15 (779):https://doi.org/10.1186/1471-2164-15-779 2014
    • Luo, Shu-Jin, Zhang, Yue, Johnson, Warren E., Miao, Lin, Martelli, Paolo, Antunes, Agostinho, Smith, James L. D., and O'Brien, Stephen J. 2014. "Sympatric Asian Felid Phylogeography Reveals A Major Indochinese-Sundaic Divergence." Molecular ecology 23 (8):2072-2092. https://doi.org/10.1111/mec.12716 2014
    • Walters-Conte, Kathryn, Le Johnson, Diana, Johnson, Warren E., O'Brien, Stephen J., and Pecon-Slattery, Jill. 2014. "The Dynamic Proliferation of CanSINEs Mirrors the Complex Evolution of Feliforms." BMC Evolutionary Biology, 14, (1). https://doi.org/10.1186/1471-2148-14-137. 2014
    • Johnson, Warren E. and Koepfli, Klaus-Peter. 2014. "The Role of Genomics in Conservation and Reproductive Sciences." Advances in Experimental Medicine and Biology 753:71-96. https://doi.org/10.1007/978-1-4939-0820-2_5 2014
    • Jarvis, Erich D., Mirarab, Siavash, Aberer, Andre J., Li, Bo, Houde, Peter, Li, Cai, Ho, Simon Y. W., Faircloth, Brant C., Nabholz, Benoit, Howard, Jason T., Suh, Alexander, Weber, Claudia C., Fonseca, Rute R. da, Li, Jianwen, Zhang, Fang, Li, Hui, Zhou, Long, Narula, Nitish, Liu, Liang, Ganapathy, Ganesh, Boussau, Bastien, Bayzid, Md Shamsuzzoha, Zavidovych, Volodymyr, Subramanian, Sankar, Gabaldón, Toni et al. 2014. "Whole-genome analyses resolve early branches in the tree of life of modern birds." Science, 346, (6215) 1320–1331. https://doi.org/10.1126/science.1253451. 2014
    • Matte, Eunice M., Castilho, Camila S., Miotto, Renata A., Sana, Denis A., Johnson, Warren E., O'Brien, Stephen J., Freitas, Thales R. O. de, and Eizirik, Eduardo. 2013. "Molecular evidence for a recent demographic expansion in the puma (Puma concolor) (Mammalia, Felidae)." Genetics and Molecular Biology 36 (4):586-597. https://doi.org/10.1590/S1415-47572013000400018 2013
    • Benson, John F., Hostetler, Jeffrey A., Onorato, David P., Johnson, Warren E., Roelke, Melody E., O'Brien, Stephen J., Jansen, Deborah, and Oli, Madan K. 2011. "Intentional genetic introgression influences survival of adults and subadults in a small, inbred felid population." Journal of Animal Ecology 80 (5):958-967. https://doi.org/10.1111/j.1365-2656.2011.01809.x 2011
    • Johnson, Warren E., Onorato, David P., Roelke, Melody E., Land, E. Darrell, Cunningham, Mark, Belden, Robert C., McBride, Roy, Jansen, Deborah, Lotz, Mark, Shindle, David, Howard, JoGayle, Wildt, David E., Penfold, Linda M., Hostetler, Jeffrey A., Oli, Madan K., and O'Brien, Stephen J. 2010. "Genetic Restoration of the Florida Panther." Science 329 (5999):1641-1645. https://doi.org/10.1126/science.1192891 2010
    • Haussler, David, O'Brien, Stephen J., Ryder, Oliver A., Barker, F. Keith, Clamp, Michele, Crawford, Andrew J., Hanner, Robert, Hanotte, Olivier, McGuire, Jimmy A., Miller, Webb, Murphy, Robert W., Murphy, William J., Sheldon, Frederick H., Sinervo, Barry, Venkatesh, Byrappa, Wiley, Edward O., Allendorf, Fred W., Amato, George, Baker, C. Scott, Bauer, Aaron, Beja-Pereira, Albano, Bermingham, Eldredge, Bernardi, Giacomo, Bonvicino, Cibele R., Brenner, Sydney et al. 2009. "Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species." The Journal of Heredity 100 (6):659-674. https://doi.org/10.1093/jhered/esp086 2009

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