Zimmer, Elizabeth (Liz)
Former Research Botanist (various land plant groups)
The majority of Zimmer's present research projects deal with studies of the pattern and process of molecular evolution in green plants. When she began her postdoctoral work in 1980, she developed nuclear ribosomal genes as a good model for both phylogenetic and evolutionary process studies. At the Smithsonian, this work has continued to use ribosomal and chloroplast gene markers for molecular systematic studies of key groups such as the Isoetes, ferns, Gesneriaceae, several Pacific genera including Rutaceae, and the grape family, Vitaceae. These projects have involved graduate students, postdoctoral fellows and curators in the Department of Botany at NMNH (P. Schafran, J. Skog, L. Skog, W. Wagner, and J. Wen, respectively). Additionally, we have used microsatellite profiling for application to species and population level questions with colleagues including graduate students from Johns Hopkins and the University of Maryland. Most recently, we have begun using Next Generation DNA Sequencing techniques (transcriptomatics, genome skimming and target capture) to resolve evolutionary relationships among some of those species groups.
Positions
- Editor in Chief, Molecular Phylogenetics and Evolution 2018 - 2023
Geographic Focus
- Eastern North America/Asia Continent
- Pacific islands Continent
Background And Education
Education And Training
- B.A., Cornell University
- Ph.D. in Biochemistry, University of California, Berkeley , Biochemistry, Evolution of Primate Globin Genes 1973 - 1980
- Washington University (St. Louis) , Biological Sciences, Monsanto Fellow 1983 - 1984
- Stanford University , Biological Sciences, NIH Fellow 1981 - 1982
Awards And Honors
- Smithsonian Scholarly Studies Award, conferred by Smithsonian Scholarly Studies Awards, 2020
- Dobzhansky Prize, conferred by Society for the Study of Evolution, 1982
- Radcliffe Fellow, conferred by Harvard University, 2004 - 2005
- NSF Visiting Fellowship for Women, 1993 - 1995
Publications
Selected Publications
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Article
- Nie, Ze‐Long, Hodel, Richard, Ma, Zhi‐Yao, Johnson, Gabriel, Ren, Chen, Meng, Ying, Ickert‐Bond, Stefanie M., Liu, Xiu‐Qun, Zimmer, Elizabeth, and Wen, Jun. 2023. "Climate‐influenced boreotropical survival and rampant introgressions explain the thriving of New World grapes in the north temperate zone." Journal of Integrative Plant Biology, 65, (5) 1183–1203. https://doi.org/10.1111/jipb.13466. 2023
- Talavera, Alicia, Nie, Ze-Long, Ma, Zhi-Yao, Johnson, Gabriel, Ickert-Bond, Stefanie, Zimmer, Elizabeth A., and Wen, Jun. 2023. "Phylogenomic analyses using a new 1013-gene Vitaceae bait-set support major groups of North American Vitis." Molecular phylogenetics and evolution, 186. https://doi.org/10.1016/j.ympev.2023.107866. 2023
- Suissa, Jacob S., Kinosian, Sylvia P., Schafran, Peter W., Bolin, Jay F., Taylor, W. Carl, and Zimmer, Elizabeth A. 2022. "Homoploid hybrids, allopolyploids, and high ploidy levels characterize the evolutionary history of a western North American quillwort (Isoëtes) complex." Molecular phylogenetics and evolution, 166, San Diego, California: Academic Press Incorporated Elsevier Science. https://doi.org/10.1016/j.ympev.2021.107332. 2022
- Nie, Ze‐Long, Wen, Jun, Ma, Zhi‐Yao, Tian, Jing‐Pu, Zhou, Yong‐Feng, Liu, Xiu‐Qun, and Zimmer, Elizabeth. 2022. "Phylogenetic relationships, hybridization events, and drivers of diversification of East Asian wild grapes as revealed by phylogenomic analyses." Journal of Systematics and Evolution, https://doi.org/10.1111/jse.12918. 2022
- Hodel, Richard G. J., Zimmer, Elizabeth A., Liu, Bin-Bin, and Wen, Jun. 2022. "Synthesis of Nuclear and Chloroplast Data Combined With Network Analyses Supports the Polyploid Origin of the Apple Tribe and the Hybrid Origin of the Maleae-Gillenieae Clade." Frontiers in Plant Science, 12. https://doi.org/10.3389/fpls.2021.820997. 2022
- Hodel, Richard G. J., Zimmer, Elizabeth, and Wen, Jun. 2021. "A phylogenomic approach resolves the backbone of Prunus (Rosaceae) and identifies signals of hybridization and allopolyploidy." Molecular phylogenetics and evolution, 160. https://doi.org/10.1016/j.ympev.2021.107118. 2021
- Liu, Bin‐Bin, Ma, Zhi‐Yao, Ren, Chen, Hodel, Richard G. J., Sun, Miao, Liu, Xiu‐Qun, Liu, Guang‐Ning, Hong, De‐Yuan, Zimmer, Elizabeth A., and Wen, Jun. 2021. "Capturing single‐copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in Vitaceae." Journal of Systematics and Evolution, 59, (5) 1124–1138. https://doi.org/10.1111/jse.12806. 2021
- Ma, Zhi-Yao, Nie, Ze-Long, Ren, Chen, Liu, Xiu-Qun, Zimmer, Elizabeth A., and Wen, Jun. 2021. "Phylogenomic relationships and character evolution of the grape family (Vitaceae)." Molecular phylogenetics and evolution, 154 Article 106948. https://doi.org/10.1016/j.ympev.2020.106948. 2021
- Wen, Jun, Herron, Sterling A., Yang, Xue, Liu, Bin-Bin, Zuo, Yun-Juan, Harris, Aj, Kalburgi, Yash, Johnson, Gabriel, and Zimmer, Elizabeth A. 2020. "Nuclear and Chloroplast Sequences Resolve the Enigmatic Origin of the Concord Grape." Frontiers in Plant Science, 11 Article 263. https://doi.org/10.3389/fpls.2020.00263. 2020
- Zhou, Juannan, Reynolds, Richard J., Zimmer, Elizabeth A., Dudash, Michele R., and Fenster, Charles B. 2020. "Variable and sexually conflicting selection on Silene stellata floral traits by a putative moth pollinator selective agent." Evolution; international journal of organic evolution 74 (7):1321-1334. https://doi.org/10.1111/evo.13965 2020
- Lim, Jun Y., Marshall, Charles R., Zimmer, Elizabeth A., and Wagner, Warren L. 2019. "Multiple colonizations of the Pacific by Peperomia (Piperaceae): Complex patterns of long-distance dispersal and parallel radiations on the Hawaiian Islands." Journal of Biogeography, 46, (12) 2651–2652. https://doi.org/10.1111/jbi.13717. 2019
- Shivakumar, Vikram S., Johnson, Gabriel, and Zimmer, Elizabeth A. 2019. "Transcriptome analysis of the curry tree (Bergera koenigii L., Rutaceae) during leaf development." Scientific Reports, 9 Article 4230. https://doi.org/10.1038/s41598-019-40227-z. 2019
- Schafran, Peter W., Zimmer, Elizabeth A., Taylor, W. Carl, and Musselman, Lytton J. 2018. "A Whole Chloroplast Genome Phylogeny of Diploid Species of Isoetes (Isoetaceae, Lycopodiophyta) in the Southeastern United States." Castanea: The Journal of the Southern Appalachian Botanical Society 83 (2):224-235. https://doi.org/10.2179/17-132 2018
- Zhou, Juannan, Zimmer, Elizabeth A., Fenster, Charles B., and Dudash, Michele R. 2018. "Characterization of the mating system of a native perennial tetraploid herb, Silene stellata." American Journal of Botany 0 (0):01-October 2018. https://doi.org/10.1002/ajb2.1158 2018
- Wen, Jun, Harris, Aj, Kalburgi, Yash, Zhang, Ning, Xu, Yuan, Zheng, Wei, Ickert-Bond, Stefanie M., Johnson, Gabriel, and Zimmer, Elizabeth A. 2018. "Chloroplast phylogenomics of the New World grape species (Vitis, Vitaceae)." Journal of Systematics and Evolution, 56, (4) 297–308. https://doi.org/10.1111/jse.12447. 2018
- Zhou, Juannan, Dudash, Michele R., Zimmer, Elizabeth A., and Fenster, Charles B. 2018. "Comparison of population genetic structures of the plant Silene stellata and its obligate pollinating seed predator moth Hadena ectypa." Annals of Botany 122 (4):593-603. https://doi.org/10.1093/aob/mcy091 2018
- Martin, Michael D., Quiroz-Claros, Elva, Brush, Grace S., and Zimmer, Elizabeth Anne. 2018. "Herbarium collection-based phylogenetics of the ragweeds (Ambrosia, Asteraceae)." Molecular phylogenetics and evolution 120:335-341. https://doi.org/10.1016/j.ympev.2017.12.023 2018
- Schafran, Peter W., Johnson, Gabriel, Taylor, W. Carl, Zimmer, Elizabeth A., and Musselman, Lytton J. 2018. "Low-copy nuclear markers in Isoëtes (Isoëtaceae) identified with transcriptomes." Applications in Plant Sciences, 6, (4). https://doi.org/10.1002/aps3.1142. 2018
- Wang, Mei-Na, Duan, Lei, Qiao, Qi, Wang, Zheng-Feng, Zimmer, Elizabeth Anne, Li, Zhong-Chao, and Chen, Hong-Feng. 2018. "Phylogeography and conservation genetics of the rare and relict Bretschneidera sinensis (Akaniaceae)." Plos One 13 (1):1-17. https://doi.org/10.1371/journal.pone.0189034 2018
- Shivakumar, Vikram S., Appelhans, Marc S., Johnson, Gabriel, Carlsen, Monica, and Zimmer, Elizabeth Anne. 2017. "Analysis of whole chloroplast genomes from the genera of the Clauseneae, the curry tribe (Rutaceae, Citrus family)." Molecular phylogenetics and evolution, 117 135–140. https://doi.org/10.1016/j.ympev.2016.12.015. 2017
- Wen, Jun, Harris, Aj, Ickert-Bond, Stefanie, Dikow, Rebecca B., Wurdack, Kenneth J., and Zimmer, Elizabeth Anne. 2017. "Developing integrative systematics in the informatics and genomic era, and calling for a global Biodiversity Cyberbank." Journal of Systematics and Evolution, 55, (4) 308–321. https://doi.org/10.1111/jse.12270. 2017
- Zimmer, Elizabeth Anne and Wildman, Derek E. 2017. "Editorial for 25th Anniversary Issue of Molecular Phylogenetics and Evolution." Molecular Phylogenetics and Evolution 117:1. https://doi.org/10.1016/j.ympev.2017.10.024 2017
- Siegel, Chloe S., Stevenson, Florence O., and Zimmer, Elizabeth Anne. 2017. "Evaluation and comparison of FTA card and CTAB DNA extraction methods for non-agricultural taxa." Applications in Plant Sciences 5 (2):https://doi.org/10.3732/apps.1600109 2017
- Acevedo-Rodríguez, Pedro, Wurdack, Kenneth J., Ferrucci, M. S., Johnson, Gabriel, Dias, Pedro, Coelho, Rubens G., Somner, Genise V., Steinmann, Victor W., Zimmer, Elizabeth Anne, and Strong, Mark T. 2017. "Generic Relationships and Classification of Tribe Paullinieae (Sapindaceae) with a New Concept of Supertribe Paulliniodae." Systematic Botany, 42, (1) 96–114. https://doi.org/10.1600/036364417X694926. 2017
- Zhang, Ning, Wen, Jun, and Zimmer, Elizabeth Anne. 2016. "Another look at the phylogenetic position of the grape order Vitales: Chloroplast phylogenomics with an expanded sampling of key lineages." Molecular phylogenetics and evolution, 101 216–223. https://doi.org/10.1016/j.ympev.2016.04.034. 2016
- Zhang, Ning, Wen, Jun, and Zimmer, Elizabeth Anne. 2016. "Correction: Congruent Deep Relationships in the Grape Family (Vitaceae) Based on Sequences of Chloroplast Genomes and Mitochondrial Genes via Genome Skimming." PLOS ONE, 11, (3) 1. https://doi.org/10.1371/journal.pone.0152059. 2016
- Zhou, Juannan, Dudash, Michele R., Fenster, Charles B., and Zimmer, Elizabeth Anne. 2016. "Development of Highly Variable Microsatellite Markers for the Tetraploid Silene stellata (Caryophyllaceae)." Applications in Plant Sciences 4 (12):1600117. https://doi.org/10.3732/apps.1600117 2016
- Martin, Michael D., Olsen, Morten Tange, Samaniego, Jose A., Zimmer, Elizabeth Anne, and Gilbert, M. T. 2016. "The population genomic basis of geographic differentiation in North American common ragweed (Ambrosia artemisiifolia L.)." Ecology and Evolution 6 (11):3760-3771. https://doi.org/10.1002/ece3.2143 2016
- Zhang, Ning, Wen, Jun, and Zimmer, Elizabeth Anne. 2015. "Congruent Deep Relationships in the Grape Family (Vitaceae) Based on Sequences of Chloroplast Genomes and Mitochondrial Genes via Genome Skimming." PLOS ONE, 10, (12) 1–12. https://doi.org/10.1371/journal.pone.0144701. 2015
- Budd, Cara, Zimmer, Elizabeth Anne, and Freeland, Joanna R. 2015. "Conservation genetics of Magnolia acuminata, an endangered species in Canada: Can genetic diversity be maintained in fragmented, peripheral populations?." Conservation Genetics 1-15. https://doi.org/10.1007/s10592-015-0746-9 2015
- Zhang, Ning, Wen, Jun, and Zimmer, Elizabeth Anne. 2015. "Expression patterns of AP1, FUL, FT and LEAFY orthologs in Vitaceae support the homology of tendrils and inflorescences throughout the grape family." Journal of Systematics and Evolution, 53, (5) 469–476. https://doi.org/10.1111/jse.12138. 2015
- Wen, Jun, Liu, Jianquan, Ge, Song, Xiang, Qiu-Yun (Jenny), and Zimmer, Elizabeth Anne. 2015. "Phylogenomic approaches to deciphering the tree of life." Journal of Systematics and Evolution, 53, (5) 369–370. https://doi.org/10.1111/jse.12175. 2015
- Zimmer, Elizabeth Anne and Wen, Jun. 2015. "Using nuclear gene data for plant phylogenetics: Progress and prospects II. Next-gen approaches." Journal of Systematics and Evolution, 53, (5) 371–379. https://doi.org/10.1111/jse.12174. 2015
- Martin, Michael D., Zimmer, Elizabeth Anne, Olsen, Morten T., Foote, Andrew D., Gilbert, M. T., and Brush, Grace S. 2014. "Herbarium specimens reveal a historical shift in phylogeographic structure of common ragweed during native range disturbance." Molecular ecology 23 (7):1701-1716. https://doi.org/10.1111/mec.12675 2014
- Appelhans, Marc S., Wen, Jun, Wood, Kenneth R., Allan, Gerard J., Zimmer, Elizabeth Anne, and Wagner, Warren L. 2014. "Molecular phylogenetic analysis of Hawaiian Rutaceae (Melicope, Platydesma and Zanthoxylum) and their different colonization patterns." Botanical Journal of the Linnean Society, 174, (3) 425–448. https://doi.org/10.1111/boj.12123. 2014
- Wen, Jun, Xiong, Zhiqiang, Nie, Ze-Long, Mao, Likai, Zhu, Yabing, Kan, Xian-Zhao, Ickert-Bond, Stefanie, Gerrath, Jean, Zimmer, Elizabeth Anne, and Fang, Xiao-Dong. 2013. "Transcriptome Sequences Resolve Deep Relationships of the Grape Family." PLoS ONE, 8, (9) e74394. https://doi.org/10.1371/journal.pone.0074394. 2013
- Zimmer, Elizabeth Anne, Suh, Youngbae, and Karol, Kenneth G. 2012. "Phylogenetic placement of a recently described taxon of the genus Pleodendron (Canellaceae)." Phytologia 94 (3):400-408. 2012
- Sessa, Emily B., Zimmer, Elizabeth Anne, and Givnish, Thomas J. 2012. "Phylogeny, Divergence Times, and Historical Biogeography of New World Dryopteris (Dryopteridaceae)." American Journal of Botany 99 (4):730-750. https://doi.org/10.3732/ajb.1100294 2012
- Sessa, Emily B., Zimmer, Elizabeth Anne, and Givnish, Thomas J. 2012. "Reticulate evolution on a global scale: A nuclear phylogeny for New World Dryopteris (Dryopteridaceae)." Molecular phylogenetics and evolution 64 (3):563-581. https://doi.org/10.1016/j.ympev.2012.05.009 2012
- Sessa, Emily B., Zimmer, Elizabeth Anne, and Givnish, Thomas J. 2012. "Unraveling reticulate evolution in North American Dryopteris (Dryopteridaceae)." BMC Evolutionary Biology 12:104. https://doi.org/10.1186/1471-2148-12-104 2012
- Zimmer, Elizabeth A. and Wen, Jun. 2012. "Using nuclear gene data for plant phylogenetics: progress and prospects." Molecular phylogenetics and evolution, 65, (2) 774–785. https://doi.org/10.1016/j.ympev.2012.07.015. 2012
- Bacon, Christine D., Allan, Gerard J., Zimmer, Elizabeth Anne, and Wagner, Warren L. 2011. "Genome scans reveal high levels of gene flow in Hawaiian Pittosporum." Taxon, 60 733–741. 2011
- Harbaugh Reynaud, Danica, Nepokroeff, Molly, Rabeler, Richard K., McNeill, John, Zimmer, Elizabeth Anne, and Wagner, Warren L. 2010. "A New Lineage-Based Tribal Classification of the Family Caryophyllaceae." International Journal of Plant Sciences, 171, (2) 185–198. https://doi.org/10.1086/648993. 2010
- Martén-Rodríguez, Silvana, Fenster, Charles B., Agnarsson, Ingi, Skog, Laurence E., and Zimmer, Elizabeth Anne. 2010. "Evolutionary breakdown of pollination specialization in a Caribbean plant radiation." New Phytologist, 188, (2) 403–417. https://doi.org/10.1111/j.1469-8137.2010.03330.x. 2010
- Rasmussen, David A., Kramer, Elena M., and Zimmer, Elizabeth Anne. 2009. "One size fits all? Molecular evidence for a commonly inherited petal identity program in Ranunculales." American Journal of Botany 96 (1):96-109. 2009
- Harbaugh Reynaud, Danica, Wagner, Warren L., Allan, Gerard J., and Zimmer, Elizabeth Anne. 2009. "The Hawaiian Archipelago is a stepping stone for dispersal in the Pacific: an example from the plant genus Melicope (Rutaceae)." Journal of Biogeography, 36, (2) 230–241. https://doi.org/10.1111/j.1365-2699.2008.02008.x. 2009
- Nie, Ze-Long, Wen, Jun, Azuma, Hiroshi, Qiu, Yin-Long, Sun, Hang, Meng, Ying, Sun, Wei-Bang, and Zimmer, Elizabeth Anne. 2008. "Phylogenetic and biogeographic complexity of Magnoliaceae in the Northern Hemisphere inferred from three nuclear data sets." Molecular Phylogenetics and Evolution, 48, (3) 1027–1040. https://doi.org/10.1016/j.ympev.2008.06.004. 2008
- Roalson, E. H., Skog, Laurence E., and Zimmer, Elizabeth Anne. 2008. "Untangling Gloxinieae (Gesneriaceae). II. Reconstructing biogeographic patterns and estimating divergence times among new world continental and island lineages." Systematic Botany, 33, (1) 159–175. https://doi.org/10.1600/036364408783887429. 2008
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Chapter
- Wen, Jun, Egan, Ashley N., Dikow, Rebecca B., and Zimmer, Elizabeth Anne. 2015. "Utility of transcriptome sequencing for phylogenetic inference and character evolution." In Next-generation sequencing in plant systematics. Hörandl, E. and Appelhans, M. S., editors. 51–91. International Association for Plant Taxonomy (IAPT). https://doi.org/10.14630/000003. 2015
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Dataset
- Acevedo-Rodríguez, Pedro, Wurdack, Kenneth J., Ferrucci, M. S., Johnson, Gabriel, Dias, Pedro, Coelho, Rubens G., Somner, Genise V., Steinmann, Victor W., Zimmer, Elizabeth Anne, and Strong, Mark T. 2017. [Dataset] Generic Relationships and Classification of Tribe Paullinieae (Sapindaceae) with a New Concept of Supertribe Paulliniodae. Distributed by Dryad. https://doi.org/10.5061/dryad.p2g6p. 2017
Collection Or Series Editor For
- Molecular Phylogenetics and Evolution (Journal)
Affiliation
Member Of
Contact
Location
- National Museum of Natural History Academic Department