Fungus-farming ants (Hymenoptera: Formicidae) have become model systems for exploring questions regarding the evolution of symbiosis. However, robust phylogenetic studies of both the ant agriculturalists and their fungal cultivars are necessary for addressing whether or not observed ant–fungus associations are the result of coevolution and, if so, whether that coevolution has been strict or diffuse. Here we focus on the evolutionary relationships of the species within the ant genus Myrmicocrypta and of their fungal cultivars. The fungus-farming ant genus Myrmicocrypta was created by Fr. Smith in 1860 based on a single alate queen. Since then, 31 species and subspecies have been described. Until now, the genus has not received any taxonomic treatment and the relationships of the species within the genus have not been tested. Our molecular analyses, using ∼40 putative species and six protein-coding (nuclear and mitochondrial) gene fragments, recover Myrmicocrypta as monophyletic and as the sister group of the genus Mycocepurus Forel. The species M. tuberculata Weber is recovered as the sister to the rest of Myrmicocrypta. The time-calibrated phylogeny recovers the age of stem group Myrmicocrypta plus its sister group as 45 Ma, whereas the inferred age for the crown group Myrmicocrypta is recovered as 27 Ma. Ancestral character-state analyses suggest that the ancestor of Myrmicocrypta had scale-like or squamate hairs and that, although such hairs were once considered diagnostic for the genus, the alternative state of erect simple hairs has evolved at least seven independent times. Ancestral-state analyses of observed fungal cultivar associations suggest that the most recent common ancestor of Myrmicocrypta cultivated clade 2 fungal species and that switches to clade 1 fungi have occurred at least five times. It is our hope that these results will encourage additional species-level phylogenies of fungus-farming ants and their fungal cultivars, which are necessary for understanding the evolutionary processes that gave rise to agriculture in ants and that produced the current diversity of mutualistic ant–fungus interactions.
