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• Bolotov, Ivan N., Pfeiffer, John M., Konopleva, Ekaterina S., Vikhrev, Ilya V., Kondakov, Alexander V., Aksenova, Olga V., Gofarov, Mikhail Yu, Tumpeesuwan, Sakboworn, and Win, Than. 2018. "A new genus and tribe of freshwater mussel (Unionidae) from Southeast Asia." Scientific Reports, 8, (1). https://doi.org/10.1038/s41598-018-28385-y. 2018
• Pfeiffer, John M., Sharpe, Ashley E., Johnson, Nathan A., Emery, Kitty F., and Page, Lawrence M. 2018. "Correction to: Molecular phylogeny of the Nearctic and Mesoamerican freshwater mussel genus Megalonaias." Hydrobiologia, 811, (1) 153–154. https://doi.org/10.1007/s10750-017-3459-x. 2018
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• Ciccotto, Patrick J., Pfeiffer, John M., and Page, Lawrence M. 2017. "Revision of the Cyprinid Genus Crossocheilus (Tribe Labeonini) with Description of a New Species." Copeia, 105, (2) 269–292. https://doi.org/10.1643/CI-16-538. 2017
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• Pfeiffer, John M., Johnson, Nathan A., Randklev, Charles R., Howells, Robert G., and Williams, James D. 2016. "Generic reclassification and species boundaries in the rediscovered freshwater mussel 'Quadrula' mitchelli (Simpson in Dall, 1896)." Conservation Genetics, 17, (2) 279–292. https://doi.org/10.1007/s10592-015-0780-7. 2016
• Pfeiffer, John M. and Graf, Daniel L. 2015. "Evolution of bilaterally asymmetrical larvae in freshwater mussels (Bivalvia: Unionoida: Unionidae)." Zoological Journal of the Linnean Society, 175, (2) 307–318. https://doi.org/10.1111/zoj.12282. 2015
• Graf, Daniel L., Jones, Hugh, Geneva, Anthony J., Pfeiffer, John M., and Klunzinger, Michael W. 2015. "Molecular phylogenetic analysis supports a Gondwanan origin of the Hyriidae (Mollusca: Bivalvia: Unionida) and the paraphyly of Australasian taxa." Molecular phylogenetics and evolution, 85 1–9. (Molecular Phylogenetics and Evolution) https://doi.org/10.1016/j.ympev.2015.01.012. 2015
• Graf, Daniel L., Geneva, Anthony J., Pfeiffer, John M., and Chilala, Alex D. 2014. "Phylogenetic analysis of Prisodontopsis Tomlin, 1928 and Mweruella Haas, 1936 (Bivalvia: Unionidae) from Lake Mweru (Congo basin) supports a Quaternary radiation in the Zambian Congo." Journal of Molluscan Studies, 80, (3) 303–314. (Journal of Molluscan Studies) https://doi.org/10.1093/mollus/eyu012. 2014
• Pfeiffer, John M. and Graf, Daniel L. 2013. "Re-analysis confirms the polyphyly of Lamprotula Simpson, 1900 (Bivalvia: Unionidae)." Journal of Molluscan Studies, 79, (3) 249–256. https://doi.org/10.1093/mollus/eyt022. 2013